Capsella rubella (pink shepherd's-purse): 17899019
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Entry
17899019 CDS
T02984
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X2
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17899019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17899019
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
17899019
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_8
TPR_12
TPR_10
TPR_19
ARM_TT21_N
HEAT_Nup120
ARM_TT21_2nd
Motif
Other DBs
NCBI-GeneID:
17899019
NCBI-ProteinID:
XP_006306788
UniProt:
R0GV44
LinkDB
All DBs
Position
Unknown
AA seq
722 aa
AA seq
DB search
MVYVLFSMIKQVLHNMAIAKYFKDGCSDSKELLEELNRVKNQSEELASSTKELVEEANPE
TNLYVSEDQLDSTVTILNIAVTWFHLHQYTKSLSILQPLFQNIEPLDETTVLRICFLLLD
IALACRDAVKFLDVFDYVDKVFGFGVGFGSQEENGSSMQLSSNQVSTTSSSLSSSVAYDT
LTSGLTAAESENLEYDSEIVVKKRMKPVGHIPTKNLLTILGERSFSTVDPKLELQLYKVR
FLLLTRNLSLAKREVKHALNIAGIRDSSMALLLKSQLEYAHENHQKVLELLDVSDIQKEA
ETSGIFKNNLGCIYYQLGKYQASAVLLSKALRSCSSLRNEKRVKTFSLSQDKSVLITYNC
GLVHLALGKPLIAAQCFQKAIPVFCRQPLIWLRLAECCIMALRKGLLKEGNTSLGRSKIR
LHVAGKGKWRQLMMEENEYEELAGSSQEAKLSLPLARVYLSNGIYLLNESLSNDSKSDLK
STLFVGMNETTEASSSNHGEETNSDLEEANGDINQDIIQKSISAFKDGCRREKQLIKQAL
LANMAYVELELDNPINGLSAANSLLQLRDCSKISAFLGHVYAAEALCLLNRPTEAGEHLS
GYLVGENDFDLPYAQEDFDQWRMHTSSDCDETGDLSTENAQDSALLKPQEARGVLFADFA
ALLATKGDYDQAKQFVTKALTLLPNNVKATVTAVYIDLMLGRTQDAITQLKQCTGVSFVP
QT
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggtttatgtattgttttcaatgatcaaacaggttctacacaatatggcaattgcaaag
tacttcaaggatggttgctcggattcaaaggaactgctggaagagcttaaccgtgtcaag
aaccagagtgaagagcttgcttcttcaacaaaagaactagtggaagaggcgaaccctgaa
actaacctctatgtgtcagaggatcaacttgatagtacagtaacgattctcaacattgca
gttacctggtttcatctccatcagtatacgaaatctttatccattctacaacctttgttt
caaaatattgagccactagacgagacaaccgtacttcgtatctgcttcttgttgctggat
attgcactggcttgtcgtgatgctgttaaatttttggatgtgtttgactatgtggacaaa
gtttttggttttggtgttggtttcggaagtcaagaagaaaacggaagctcgatgcaactt
tcttcaaatcaggtatcaacgacatcttcttccctgagcagctcggtggcctacgatact
ttgacgtccggtttaacagccgctgaaagtgaaaatctagagtatgactcagaaattgtg
gtgaagaaacgaatgaagccagttggccatattccgacaaaaaatcttctcaccatatta
ggtgaaaggtcgttctctaccgttgatcccaagcttgagttgcagctctacaaggtccgg
tttttgcttcttaccagaaacttgagtctggcgaagcgtgaagttaaacatgcattgaac
attgctggaataagggactcttctatggctctcctcttgaaatcccagcttgagtatgct
catgagaatcatcaaaaggttttagagcttttggatgtctccgatattcaaaaagaagca
gagacttcaggaatcttcaagaacaaccttggttgcatatactatcagcttggaaagtat
caagcttctgctgtgttattatcaaaagctctaaggagttgttcatcccttagaaatgag
aaaagagtaaagacgttttctctctcacaggataaatctgtgttgatcacatacaactgc
ggtttagttcatttggcgttggggaagcctctaattgctgctcagtgtttccagaaggcg
atcccagttttctgcagacaacccctcatttggctccgtttagctgaatgttgtataatg
gctttacgaaagggtcttttgaaagagggaaacacttctctaggtagatcaaaaatcaga
ctccatgtagctgggaaaggaaagtggagacagcttatgatggaagaaaatgaatatgag
gaacttgctggcagttcccaagaggcaaaactttcattaccattagcacgtgtctatctc
tcaaatggtatatatctgctcaatgagtctctgtcgaatgattctaaatcagatcttaaa
tcgacattattcgtggggatgaatgagaccacagaagcatcatcctctaatcatggggaa
gagacgaactcagacttggaagaggcaaacggagatatcaaccaggatataattcagaaa
tcgatctctgctttcaaggatggttgtcgtagagaaaagcaattgatcaaacaggctctt
cttgccaatatggcatacgtcgaattggagctggataatcctatcaatggcttgtcagct
gctaattcactcttgcaacttcgagattgttcaaagattagtgctttcttaggccatgtc
tatgcagcggaggccctctgcttgctcaatcgtcccactgaagctggcgaacatttatct
ggctatctagttggagagaatgattttgatctgccatatgcacaagaagactttgaccag
tggcggatgcacacaagttctgattgtgacgagacaggggatctgtccacggaaaatgcc
caggattctgctttgcttaagccccaagaagctcgtggagtactctttgcagattttgcc
gcgctgcttgccacaaaaggagattatgaccaggcgaaacagtttgtaacgaaagcatta
actctcctaccgaacaacgtaaaagctacagttactgcggtttacatcgatctaatgtta
ggtaggacacaagatgccattacccagttgaaacagtgtacgggtgtgagctttgttccc
cagacctag
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