Capsella rubella (pink shepherd's-purse): 17899113
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Entry
17899113 CDS
T02984
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
17899113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crb04131
]
17899113
Membrane trafficking [BR:
crb04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
17899113
Hops complex
17899113
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_11
zf_RING_Vps8
Nup54_57_C
zf-rbx1
zf_RING_Vps8_fungal
zf-C3HC4
Beta-prop_VPS8
zf-RING_UBOX
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
17899113
NCBI-ProteinID:
XP_006306684
UniProt:
R0GUG1
LinkDB
All DBs
Position
Unknown
AA seq
988 aa
AA seq
DB search
MDQGRQVFSVDLLERYATKNRGMITCMAAGNDVIVLGTSKGWIIRHDFRVGGSNDIDLSV
GRTGEQSIHKVFVDPGGSHCIATVTGVGGAETFYTHANWLKPRVLSRFKGLVVNAVAWNR
QQITEVSTKEIILGTQDGQLFEMAVDEKDKREKYIKFLFELEELPEAFMALQMETANISS
GMRYYVMAVTPTRLYSFTGIGTLESVFASYKERAVHFMELPGEIPNSELHFYINQRRAVH
FAWLSGTGIYHGGLNFGAQHSYPNGDENFVENKALLDYSKLSNGTEAVKPSSMALSEYHF
LLLIGNKVKVVNRISEQIIEELQFDITTDSGTRGIIGLCSDASASIFYAYDQNSIFQVSV
VDEGRDMWKVYLDLKVYAAALANCRDPLQRDQVYLVQAEAAFTNKEYLRAASFYAKINYV
ISFEEVTLKFISINEPEALRTFLLRKLDNLSKDDKCQITMISTWATELYLDKINRLLLED
DTAIENRDSEYHSVIEEFRAFMSDCKDVLDEATTMKLLESYGRVEELVYFANLKEQYEIV
VHHYIQQGEAKKALVVLQKSSVSDELQYKFAPELIMLDAYETVEAWMANKNLNPRRLITA
MMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGIHNLLLSLYAKQEDDSALLRFLQCKF
GKGRENGPEFFYDPKYALRLCLKEKRTRACVHIYSMMSMHEEAVALALQIDPELAMAEAD
KVEDDEDLRKKLWLMVAKHVVKQEKGAKRENIRKAIAFLKETDGLLKIEDILPFFPDFAL
IDDFKEAICSSLEDYNKQIEQLKEEMNDATRGADNIRNDISALTQRYAVIDRDEECGVCK
RKILMMTGDFRMAQGHSSAGPLAPFYVFPCGHSFHAQCLITHVTSCAHEEQAEHILDLQK
QLTLLGSESRRDINGNRSDEPITNTTTADKLRSELDDAIASECPFCGELMINEITLPFIK
PEDSQHSASWDLRPQTNLANQRTISLPV
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaggaaggcaagtattttcagttgatcttctggagagatatgccacaaagaat
cgtggcatgattacatgtatggctgctgggaatgatgtcattgttcttggtactagtaaa
ggatggattatacgccatgatttcagagttgggggttctaatgatattgatctctctgtt
ggtcgaaccggggaacaatcgattcacaaggtttttgttgatcccggtggtagccattgc
attgctactgtcactggtgttggaggagctgaaacgttttatactcatgctaattggctt
aagccgcgtgtgttgagccgctttaaaggtttggtggttaatgctgtggcttggaatagg
caacagattactgaagtttctactaaggagatcattctgggcactcaggatgggcagcta
tttgagatggccgtggatgagaaagacaagagagagaagtatatcaagtttttatttgaa
cttgaagaacttccagaggccttcatggctttgcagatggaaacggctaacataagcagt
gggatgaggtactacgtgatggctgtaactcccactcgactctactcattcaccgggatt
ggaacattagaatctgtttttgctagttataaagaacgtgcagttcattttatggaactt
cctggtgaaataccaaacagcgaactacatttctatataaatcaacgaagagcggtgcat
tttgcatggctttcaggaacaggaatttatcatggtggcctaaattttggagctcagcac
agttatccaaatggtgatgagaattttgtggagaacaaagcactcttggactactcaaaa
ctgagtaatggcactgaagcagtcaagcctagttcaatggcactctctgagtatcatttc
ttgcttcttattgggaataaggttaaggttgtgaatcggataagtgaacaaatcatagaa
gagctccagtttgatataacgacagattcaggtacgaggggcataattggactttgcagc
gatgcttctgctagcattttctatgcatatgatcaaaattcgatattccaggtttctgtg
gttgatgaaggccgggatatgtggaaggtttacctagacttgaaagtctatgctgcagct
ttagcaaactgtcgtgaccctcttcagagagaccaagtttatttagttcaggcagaagct
gcattcaccaacaaggaatatctgcgagcagcatcattctacgccaaaatcaattacgta
atatcttttgaggaagtcactttgaagtttattagtataaacgaaccggaagctctgaga
acattcttgttgcggaagcttgataatctttcaaaggatgataaatgccagataaccatg
atatctacatgggcaactgagctatatttggacaagattaatcggctgcttttggaagat
gacactgctatagaaaatcgtgactctgagtatcactcggtcattgaagaattccgtgct
ttcatgagcgactgcaaggatgtattggatgaggcaaccacaatgaaacttctggaaagt
tatggtcgggttgaggagttggtatattttgcaaacttgaaggagcaatatgaaattgta
gttcaccattatatccagcaaggagaagcaaagaaagcattggtggtgctccaaaaatct
tcagtatcagatgagcttcagtataaatttgcgccggagcttattatgcttgacgcatat
gaaactgtggaagcatggatggccaacaaaaatcttaatccaaggagattaattactgca
atgatgcgctactcaagcgaacctcatgcaaagaatgagacacacgaagtcataaaatat
cttgagttttgcgtccaccgtttgcataacgaggatccagggattcacaatttacttctc
tcattatatgccaagcaggaagatgacagtgctctcctccgtttcctgcaatgcaaattt
gggaaaggacgagagaacggtcccgaatttttttacgatcccaaatatgctttgcgcctc
tgtctcaaggaaaagagaacccgtgcctgtgtccatatctacagcatgatgtctatgcat
gaagaggcggtagcacttgctcttcagattgatccagagcttgccatggctgaggctgat
aaggttgaagatgatgaagacttgagaaagaagctgtggctgatggttgcaaagcatgtt
gtcaagcaggaaaagggagctaaaagggaaaacataaggaaagccattgcctttctcaag
gaaactgatggtcttctgaagatagaagatattttgcctttctttccggactttgcctta
attgatgacttcaaggaagcgatttgctcatctcttgaggattacaacaagcaaatagaa
caattgaaagaggagatgaatgatgccacacgtggtgcagataacattagaaatgatatc
agtgcgctaactcaacgatatgctgtaatcgaccgtgacgaggaatgcggggtttgtaaa
cgtaaaatcttgatgatgaccggggatttcagaatggcacagggacattcttcagctgga
ccgttagctcctttttatgtctttccttgtgggcactctttccatgcacagtgcctgatc
acacacgtcacaagctgtgcacatgaagagcaagccgagcatatacttgatctgcagaag
cagctgacattgctcggaagcgaaagccggagggatataaatggtaacagatctgatgaa
cccataacaaacacaactactgcagacaagcttcgatcagagctagatgatgctattgcc
agcgaatgcccattctgtggagaattaatgatcaatgagatcactttgccttttataaaa
cctgaggattcacaacattctgcttcatgggacctccgaccacagaccaacttagcaaac
caaaggaccatttctttgcctgtttga
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integrated database retrieval system
