Capsella rubella (pink shepherd's-purse): 17899166
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Entry
17899166 CDS
T02984
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
17899166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
17899166
03019 Messenger RNA biogenesis [BR:
crb03019
]
17899166
Transcription machinery [BR:
crb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
17899166
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
17899166
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_12
zf-CCCH_4
zf-CCCH_RBM22
Motif
Other DBs
NCBI-GeneID:
17899166
NCBI-ProteinID:
XP_006306994
UniProt:
R0GVC9
LinkDB
All DBs
Position
Unknown
AA seq
631 aa
AA seq
DB search
MEDADGLSFDFEGGLDSGPVQSSASVPVAPPDNSSSAAVNVAPSYDHSAATVAGAGRGRS
FRQTVCRHWLRGLCMKGDACGFLHQYDKARMPICRFFRLYGECREQDCVYKHTNEDIKEC
NMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTSYNFGPNRFYQPRNVAPQLQD
KPLGQVPAQGQPQEPGNLQQQQQQQQQPQQSQHQVSQTQIPNPADQTNRSSHPLPQGVNR
YFVVKSCNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMT
SRIGGYIGGGNWKHEHGTAQYGRNFSVKWLKLCELSFHKTRNLRNPYNENLPVKISRDCQ
ELEPSIGEQLASLLYLEPDSELMAISIAAEAKREEEKAKGVTPESRAVNPDIVPFEDNEE
EEEEEDESEEEEEIMVGGPQGRGRGRGMMWPPQMPLGRGIRPMPGIGGFPLGVMGPGDAF
PYGPGGYNGMPDPFGMGPRPFGPYGPRFGGDFRGQVPGMMFPGRPPQQFPHGGYGMMGGG
GRGPHMGNGPRGGRPMYYPPATSSARPGPTNRKTPERSDERGVGVDQQNQDASHDMEQFE
VGNSVRNEESESEEEDEAPRRSRHGEGKKRR
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgctgatggactcagcttcgatttcgaaggcggtcttgattccggacctgtt
cagtcctccgcttcagtcccggttgctccgcctgataactcttcctccgccgctgttaac
gtagcaccgagctacgatcattctgccgcgacggtcgctggagctggtagaggacgaagt
ttccgacagactgtttgcagacactggcttcgtggtctgtgtatgaaaggtgacgcctgt
ggatttctccaccagtatgacaaagctcgtatgccgatctgccggtttttccggttatac
ggtgaatgccgtgagcaggattgtgtgtataagcataccaatgaagacatcaaagaatgc
aatatgtacaagctgggattttgtcccaatggtcctgattgtcgatacaggcatgcaaag
cttcctggacctccacctccagttgaggaagttcttcagaagatacaacaattgacatca
tacaattttgggccaaataggttctatcaaccacggaatgttgctccacagctacaagat
aaacctctggggcaagttccggcgcaaggccagccacaagaaccaggtaacttgcagcag
cagcaacaacaacaacaacaacctcagcaatcacaacaccaggtcagccagacacagata
ccaaaccctgctgaccaaacaaacagatcatctcatcctttgcctcagggggtaaatagg
tattttgtagtcaaaagttgcaatcgagaaaattttgaattatctgtgcaacaaggagta
tgggctacacaaaggagcaatgaagctaaacttaatgaagcttttgattctgtggaaaac
gtgatcttgatattttctgtcaaccggacccggcatttccagggctgtgctaagatgaca
tcaagaattggtggttacattggtggaggaaattggaaacatgaacatggaactgcgcag
tatggcaggaacttttcagttaaatggttaaagttgtgcgaactatccttccacaaaact
cggaatttgaggaatccttacaacgaaaacttacctgtgaagataagcagagactgtcag
gagttagagccttccattggtgaacagctggcttctttgctttatcttgaaccagatagt
gagcttatggcaatctccatagctgcagaagcgaaacgagaagaggaaaaagcaaagggt
gtaactccagagagcagggcggtgaatccagacattgtgccatttgaagataacgaagaa
gaggaagaggaagaagatgaaagtgaggaggaagaagagatcatggtggggggtcctcaa
ggcagaggaagaggaagaggaatgatgtggcctcctcaaatgcctctaggacggggaatc
agacctatgcccgggataggaggtttccctctcggggtgatgggccctggtgatgctttt
ccctatgggcctggtggctataacggtatgccagatccatttggtatgggtccacgaccc
tttggaccgtatggaccgaggttcggtggtgatttcagaggacaagtacccggaatgatg
tttcctggtaggcctccgcaacagtttccacatggcggttatggtatgatgggaggcgga
ggacgtggcccacatatgggaaacggtcctcgaggaggccgaccgatgtattatccaccg
gcaacatcatcagcacgtcctggccccaccaaccggaaaacaccagagagaagcgatgag
agaggagtgggggtggatcaacaaaatcaggatgcatcacatgacatggagcagttcgag
gttggaaacagtgtaagaaacgaagagagtgaaagtgaagaagaagacgaagctccaaga
cgatcaagacatggagaaggaaagaagcgtcggtga
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integrated database retrieval system
