Capsella rubella (pink shepherd's-purse): 17899279
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Entry
17899279 CDS
T02984
Name
(RefSeq) ATP-dependent RNA helicase DEAH13
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
crb03009
]
17899279
Enzymes [BR:
crb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
17899279
Ribosome biogenesis [BR:
crb03009
]
Eukaryotic type
90S particles
Helicases
17899279
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DHX37_C
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
ATPase
AAA_19
HTH_51
AAA_16
ResIII
Motif
Other DBs
NCBI-GeneID:
17899279
NCBI-ProteinID:
XP_006303138
UniProt:
R0GJX2
LinkDB
All DBs
Position
Unknown
AA seq
1244 aa
AA seq
DB search
MAGGTGDDCNLYVMPPRKKNKESNKMHDKLNSNKNMGSRKSQKRKLNSSDKNMVLSNSQR
RKLEKLEEEKEKKIFFSKSAEFLDKYKISEDVSSLLQSSTRIGRSATKLEKRRRAMQLSK
AGVVTEHSDESVEQKDDDDDESCMDEPTTPEHAEIETPTFVTDSEQLVDDAHKLSSDLMI
SAEETNNKLLVEDTVDMILQTTCRDDGEGSQRMDEVVENEDVAVQGPRVPAFVVHVSRPA
EVEETRKDLPIVMMEQEIMEAINHHPAVIISGQTGCGKTTQVPQFLYEAGFGSKQFSSRS
GIIGITQPRRVAVLATAKRVAFELGVRLGKEVGFQVRYDKKIGENSSIKFMTDGILLREI
QNDFLLRRYSVIILDEAHERSLNTDILIGMLTRVIKIRQEYYEEQQKSLQSGCAVTSEYQ
IITPLKLILMSATLRVEDFVSGKRLFPKVPPLIEVPTRQYPVTIHFSKKTEIADYIGQAY
KKVMSIHKKLPQGGILVFVTGQREVDYLCEKLRNFSKEFVVQAAKRDASAKKKCDDGSFG
GVDMKEIAEAFDDGSNNQNDRFSSYGEDPSDIGDGNNYGDDFEEEDMYESDEDSDWETLD
DSSGYPLVEEGNLDALRAAFKALSDKNGSAAVETTKSIPADNQEAEQEKDKFSPGKLRVL
PLYAMLSPAAQLRVFEEVEKEERLVVVATNVAETSLTIPGIKYVVDTGRVKVKNYDSKTG
MESYEVDWISQASASQRAGRAGRTGPGHCYRLYSSAVFSNIFEESSPPEITKVPVDGVVL
LMKSMNIPKVENFPFPTPPESSAIREAEQCLKALEALDSNGRLTPLGKAMSHYPMSPRHS
RMLLTVIQMLKETQNYSRANLVLGYAVAAVAALSLPNPLIMQFEGDKKNESEDADKTVKQ
DEKQRRKERKEKIRAARDRFSNPSSDALTVAYALHSFEVSDNGTGFCEANGLHLKTMDEM
SKLKNQLLRLVFSCSKPSETEDCFSWTHGTIQDVEKSWRITTSSSSKNPLLQNEEEVLGE
AICAGWADRVARKNRATEYQACAVQEPVFLHRWSSLINSAPELLVYSELLLTNRPYMHGA
TRVKPEWLVKHAKSLCVFSSPLKDPKPYYSSEEDRVLCYVVPSFGPYNWELPAHSVAITE
DRDRAAAFGCALLQGEVLPCLKSVRALLAGKPETLLEREAWGLERVGSLVIALTEKKIDS
LESLRKSWEKNPKVLYSEIEVWFQKKFRHRVKELWQRMLKEASC
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtgggacgggagacgattgcaatttatatgtaatgccaccaaggaagaagaat
aaagaatcaaataagatgcatgataagctgaattcaaataagaacatgggatcgagaaaa
tctcagaaacgaaaactgaattcttcagataagaacatggtgctgagcaattctcagaga
cggaaactggagaaattggaggaagagaaggagaaaaaaatcttcttttcgaaatctgcc
gagttcttagacaagtacaaaatatctgaggatgtatcatcactattacaatcgtcaaca
cgtataggaagatcagcgacaaagctggagaaacgtaggagagcaatgcaactttctaaa
gctggtgttgtgactgagcattctgatgaatcagttgagcaaaaagatgatgatgatgat
gaatcttgtatggacgaacctacaacaccagaacatgctgaaattgaaactccaactttt
gtaactgattctgagcaactggttgatgatgctcataaactcagttctgatttgatgatt
tctgctgaagaaactaataacaagctcttggtagaggacactgtggatatgatcttacag
acaacttgtcgtgatgatggagaaggctcacaaagaatggatgaggtagttgagaatgaa
gatgtagctgtacaaggacctcgtgtgcccgcgtttgtagttcatgtttcaagaccagct
gaagttgaagagacaaggaaggatcttccaatagtaatgatggagcaggagataatggaa
gctattaatcatcaccctgcggttattatttcaggacaaaccgggtgtggtaaaaccact
caagttccgcagttcctttatgaagctggttttggttcaaagcaattcagttcacgaagt
gggattatcgggattacccaaccacgccgtgttgcggtccttgccactgccaagagagtg
gcatttgagcttggtgttcgtctaggtaaagaagttgggtttcaggttaggtacgacaaa
aagattggtgaaaactcctctatcaagtttatgactgatgggattttacttcgtgagata
cagaatgacttcttattgaggcgttactctgtgataattctcgatgaagcccatgaaaga
agtctgaacacagacattttaattgggatgctcactcgagtcatcaaaatccgacaggaa
tactacgaggaacaacaaaaaagtcttcaatctggatgcgcggtaacctcagaataccaa
attatcacgccacttaaacttatattgatgagtgcaactttgcgagtggaagattttgta
tcggggaaaaggttattccctaaggtacctccgcttatagaggttcccactcgacagtat
ccagtaactatacatttctccaagaagactgagattgctgattatatcggtcaagcttat
aagaaagtgatgtcaattcacaaaaagttaccacaaggtggaatacttgtttttgtgacc
gggcagagagaagttgactatttatgtgagaagttacgtaatttttcaaaggaatttgtt
gttcaagctgctaaaagggatgcttccgcaaagaagaaatgtgatgatggttcttttggt
ggtgttgacatgaaggaaattgctgaagcatttgatgatggctccaacaatcaaaacgac
aggtttagttcatatggagaagatccttctgatattggtgatggtaataactatggtgat
gattttgaagaagaagacatgtatgagtctgatgaagacagcgactgggaaacccttgat
gacagttctggatatccacttgtagaggaagggaatcttgatgctcttcgagcagcgttt
aaagctttgtcagataaaaatggatcagcagctgttgagacaacaaagtccattccagca
gataatcaagaagctgagcaggaaaaagataaattttctccaggaaaattacgcgttctt
ccactctatgcaatgctatctccagctgcacagcttcgagtgtttgaggaagttgagaaa
gaagaaagacttgtggtcgtggctactaatgtggcagaaacttctctgactattcctggt
ataaagtatgtggtggatacaggtcgggttaaagtgaagaattatgattctaagactggt
atggaaagttatgaggtagattggattagccaagcttcggctagtcaacgagctggaaga
gctggacgaactggacctggccactgttaccgtctctattcatctgcggtgtttagcaat
atatttgaggaatcttcacctcctgaaatcacaaaagtccctgttgatggagtcgttctt
ctcatgaaatctatgaacattccaaaggttgagaatttcccgtttccaactccgcctgag
tcatcagctattagagaagcagaacaatgcttaaaagcattagaggctctcgacagcaac
ggaaggttaacaccattaggaaaggctatgtctcactatcccatgagtccacgtcactca
agaatgcttctcacagtcattcaaatgctaaaagagacccagaattactcacgcgcaaat
cttgtccttggatacgcggttgcagcagtagccgcattgagcttaccaaaccctttgata
atgcagtttgaaggagacaagaaaaacgaatctgaagatgctgacaaaaccgtcaagcaa
gacgagaaacaacggagaaaggagcggaaagagaagatcagagccgctcgggacagattt
tccaacccgagcagcgatgctttgactgtagcttatgcattgcattcctttgaggtctca
gataatggcacgggcttctgcgaggcaaatgggttgcatttgaagaccatggatgagatg
tctaagctcaaaaatcagcttttgcgacttgttttcagctgtagtaagccctctgaaacc
gaagactgtttctcatggactcatgggactatacaagacgtggagaagtcatggagaatc
accacatcgtcttcctcaaaaaacccgcttctacagaacgaagaagaagtgctaggagaa
gccatatgtgcaggatgggcagaccgtgtagccagaaagaacagagcgacagaataccaa
gcatgtgcggttcaagaacctgttttcttgcaccgctggtcatctctcataaactcggct
ccagaattattagtctacagcgagctcctactcaccaacagaccatacatgcacggagca
acacgagtgaagccggaatggctggtgaagcacgcaaaatcactctgcgtgttctcctcg
ccgctcaaggacccgaaaccttattactcaagtgaagaggatagagttttatgctacgtc
gtgccaagtttcggcccttataactgggagcttccagctcacagcgtggcaataacagag
gacagagatagagcagcagcattcggatgcgctctgcttcaaggagaggtattgccttgt
ttgaaaagcgtcagggctttgttggctgggaaacctgaaacgttgttggaaagagaagct
tggggtttagaaagagtagggagtttggtgatagctttgacagagaagaagattgatagt
ttagagagccttagaaagagttgggaaaagaacccgaaggtgctttactcagagattgaa
gtttggtttcagaaaaagtttcgtcatcgtgtcaaagagctctggcaaagaatgctaaag
gaggcttcatgttga
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