Capsella rubella (pink shepherd's-purse): 17899287
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Entry
17899287 CDS
T02984
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
17899287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17899287
Spliceosome [BR:
crb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
17899287
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
17899287
NCBI-ProteinID:
XP_023644886
LinkDB
All DBs
Position
Unknown
AA seq
787 aa
AA seq
DB search
MDKERYSRSHRDDRDRDSSPEHSPQREGGRRRDRDGDSKRRDSDHHRSSRREDERDRTKD
RARDRGRSVERGEREGSRDREKHHHERSHEGSKDKDARSKRKDRDEENGARDAKKKSRFS
DGNGERRSRFEDVAVESENKNAHFTEGSGAMNSTSGVSIGASSISSVASEASLAPSQTLL
TKVSSIYTTDENKDSIVRSHEVPGKSSTDGRSLSTAGKGSSNLSDDAIAKAKKALQFKHK
GLADRLKKLPLLNKGTKSTTEGSQHTKLPSSTTIPAVSTGTSFTSAVPHSGLADFGSIPN
IEAVRRAQELAAKLGFHQDPNYAPVINLFPGQAPSDTAAQRPAKPPVLRVDALGREIDEH
GNVISVTKPSNLSTLKVNINKQKKDAFQILKPQLEVDPNENPHFDPRMGIDANKILRPKR
MTFQFVEEGKWTRDAENLKLKSLFGEAKERELKVKQAQLAKAKDDINPNLIEVSERVPRK
EKPKEPIPDVEWWDANVLINGEYGDIADGSITESHLKIEKLTHYIEHPRPIEPPAEAAPP
PPQPLKLTKKEQKKLRTQRRLAKEKDKQEMIRQGLLEPPKAKVKMSNLMKVLGAEATQDP
TKLEKEIRTAAAEREQAHTDRNAARKLTPAEKREKKERKLFDDPTTIETIVSVYKIKKLS
HPKTRFKVEMNARENRLTGCSVMTDGMSVVVVEGKSKAIKRYGKLMLKRINWEEAEKKEG
KDDMEEDDEEETNGENKCWLVWQGSVAKPSFHRFHVQQCLTESSAKKVFMDAGVVHYWDL
AVNYSDD
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atggataaggagagatattccaggagccaccgtgacgatcgtgatcgtgattcgagtccg
gaacactctccccaacgtgaaggcggacgccgacgtgatcgcgacggtgattcgaagagg
cgtgattcagaccaccatcggtcatcgaggcgcgaggatgagagagataggactaaggat
agagctcgggatagaggtagatctgtagagcgaggtgagagggaagggagtagagatagg
gaaaagcaccaccatgagaggtctcacgaagggagtaaagataaggatgctaggagcaag
aggaaagatagagacgaagagaatggggctagggatgctaagaagaaatctaggttttct
gatggcaatggtgagaggaggagtaggtttgaggatgtggctgtggaatctgagaacaag
aatgctcacttcactgagggttctggggctatgaattccaccagtggcgtttctattggc
gcctcttcaattagttctgttgcatcggaagcttctttggcccctagtcaaaccctgctc
actaaggtatcttcgatatatacaacggatgaaaataaggatagtattgtcagatctcat
gaggttcctggaaaatctagtacagatggaagatcattgtcaacagctgggaaaggtagt
tcaaacttgtctgatgatgcgatagccaaagctaaaaaagcactacagttcaagcacaag
ggattggcggatagactgaagaaacttcctttgttgaacaagggtaccaagtcaactaca
gaaggtagccaacataccaaactaccatcatcgactaccattcctgctgtctctactgga
acatcttttacttcagcagtgccacattctggccttgctgattttgggagtattcccaac
attgaagctgttaggcgagctcaggagctggcagcaaaattgggatttcaccaggatcca
aattatgctcccgttatcaacctatttccaggtcaggcaccctcagacacggctgcacaa
agacccgccaagccccctgttctgcgcgtagatgcactaggaagggagatagatgaacat
ggaaatgttattagtgtgactaaaccaagcaatcttagtacattgaaggttaacataaac
aaacagaagaaagatgcttttcagattcttaaacctcaactggaagtagatccaaatgaa
aacccccattttgacccaaggatgggtattgatgcaaacaaaattctgagacctaaacgt
atgactttccagtttgttgaggaaggtaagtggacaagagatgctgagaatttgaagtta
aagagtctatttggtgaagcaaaagaaagggagcttaaggtgaagcaagcacagctggca
aaggcaaaggatgatataaatccaaatttgatagaggtatcggaacgtgtccctagaaaa
gagaagcccaaggagccaattccagatgttgagtggtgggatgcaaatgtcctcatcaat
ggcgaatatggcgacatagctgatggcagcattactgaaagtcatctaaagatagaaaaa
cttactcattatattgagcatcctcgtcccatagagccacctgcagaggcagcgccccca
ccacctcaacctcttaaactgacaaagaaggaacagaagaaactgcgaacccagaggcgt
ctagcaaaagaaaaggataaacaggagatgatcagacaaggtctgcttgaaccaccaaaa
gcaaaggtgaaaatgagcaacttaatgaaggttcttggggctgaagcgacccaagaccca
accaagcttgaaaaagagatccgcacagcagctgcagagcgtgaacaggctcatacagac
aggaacgcagcacggaagctgactcctgcagagaaacgtgagaaaaaagagaggaagctt
ttcgatgatccaacaactattgaaacaattgtgtcagtgtacaagatcaaaaagctatca
catcctaaaacaagattcaaagtggagatgaatgcaagagagaacagattaacagggtgt
agtgtgatgacggatggaatgagtgtggttgtggttgagggcaaaagtaaagcgataaag
agatacgggaagctgatgctgaagcgaataaactgggaagaggcagagaagaaggaaggg
aaggatgacatggaagaagatgatgaagaagagacgaatggggaaaacaaatgttggttg
gtttggcagggaagcgttgcgaagccgagttttcataggtttcatgtacaacaatgcttg
acagaatcctctgcgaagaaagttttcatggatgccggtgttgttcactactgggatctt
gctgtcaattactcagacgactaa
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