KEGG   Capsella rubella (pink shepherd's-purse): 17899661
Entry
17899661          CDS       T02984                                 
Name
(RefSeq) RNA polymerase II transcription factor B subunit 4
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03022  Basal transcription factors
crb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    17899661
  09124 Replication and repair
   03420 Nucleotide excision repair
    17899661
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crb03021]
    17899661
   03400 DNA repair and recombination proteins [BR:crb03400]
    17899661
Transcription machinery [BR:crb03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     17899661
DNA repair and recombination proteins [BR:crb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     17899661
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 17899661
NCBI-ProteinID: XP_006305456
UniProt: R0I7P4
LinkDB
Position
Unknown
AA seq 301 aa
MPSVASKQYPDDVSLLVLLLDTNPFFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI
ATGYSSCEYIYDSSLTSNHGSFERDRTGMPPLFASLLNKLEDFVTKDEELSREEGNEDRT
PSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVP
IDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGV
DFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDESSSVSDKKKKASQ
T
NT seq 906 nt   +upstreamnt  +downstreamnt
atgccttcggttgcttctaaacagtatccagacgatgttagcctactagttttgttgctt
gatacaaatccctttttctggagcactacttcgatcacgttctctcaattcctttctcat
gtgcttgcgtttctgaatgcggttttggggttaaatcaattgaaccaagttgttgttata
gctactgggtacagttcctgtgagtacatttatgattcctctttgacatcgaatcatggg
agtttcgagagagacagaactgggatgcctcctctttttgcttctttgctgaacaaattg
gaagactttgttaccaaagatgaggagctcagcagggaggagggaaatgaggatagaaca
ccttcttgtctcttatcaggatcactctccatggctctttgctatatacagagggtcttc
cgttctggacatcttcatccccagccccggattttatgcttgcaaggttccccagatggc
ccggaacaatatgtagctgttatgaactctatcttctctgcccagcgcttaatggttccc
atagattcatgttacataggtgtacagaactcagcatttttgcagcaggcatcttatata
acaggcggtgtacatcacacacctaaacagttggatgggctgtttcagtatctaacgaca
atctttgcaactgatttgcactcccgcggttttgtacaacttcctaaacccataggtgtt
gattttcgagcatcgtgtttttgccacaagaagacaatcgatatgggctacatatgctca
gtgtgtctatccattttctgtgagcatcacaagaaatgttcaacgtgcgggtctgttttt
ggtcagtctaaacttgatgaatcttcatctgtttctgataagaagaaaaaagcttctcag
acctaa

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