Capsella rubella (pink shepherd's-purse): 17900002
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Entry
17900002 CDS
T02984
Name
(RefSeq) cleavage stimulation factor subunit 77
KO
K14408
cleavage stimulation factor subunit 3
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
17900002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17900002
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
17900002
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_15
TPR_19
TPR_CcmH_CycH
TPR_16
TPR_2
Iml2-TPR_39
TPR_8
A-2_8-polyST
Motif
Other DBs
NCBI-GeneID:
17900002
NCBI-ProteinID:
XP_006303637
UniProt:
R0IE97
LinkDB
All DBs
Position
Unknown
AA seq
731 aa
AA seq
DB search
MADKYNVEEAEALAKRALHLPIAQATPIYEQLLSLYPTSARYWKQYVEAQMAVNNDDATK
QIFSRCLLTCLQVPLWQCYIRFIRKVYDKKGAEGQEETTKAFEFMLNYIGTDIASGPIWT
EYITFLKSLPALNAYEDSQRLRKVYQRAILTPTHHVEQLWKDYENFENSVNRQLAKGLVN
EYQPKFNSARAVYRERKKYIEEIDWNMLAVPPTGSSKEETQWVAWKKFLSFEKGNPQRID
TASSTKRIIYAYEQCLMCLYHFPDVWHDYAEWHVKSGSSDAAIKVFQRALKAIPDSEMLK
YAYAEMEESRGAIQSAKKLYESILGVSTNSLAHIQFLRFLRRAEGVEAARKYFLDARKSP
SCTYHVYIAFATMVFCLDKDPKVAHKIFEEGLKLYMNEPVYILEYADFLTRLNDDRNIRA
LFERALSTLPAEESAEVWKRFIQFEQTYGDLASILKVEQRRKEALSGKGEEGSSPLESSL
QDVVSRYSYMDLWPCSFKELDHLSRQELLVKNLNKKVGKTNLPHGPAAIGSVASSSKVVY
PDTSQMVVYDPTKKSEFASSTNPVAVSASNTFPSIVTATTTHGSASTYDEIPKTTPPALL
AFLANLPVVDGPTPNVDVVLSICLQSELPTSQNVKQNLVAKGNAPSQNESSGPNRGGSQR
LSRDRRATKRKDSDRQEEDDTATVQSQPLPTDVFRLRQMRKARGISTSSQTPTGSTSYGS
AFSGELSGSTG
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagtacaacgttgaggaagcagaggctttggccaagcgagccttgcatcta
ccaattgcacaggcgacgccgatctatgagcagcttttgtctctttatcccacttctgcg
agatattggaagcaatatgtggaggcacagatggctgtaaacaatgatgatgctacgaaa
cagatatttagtcgttgtctgttgacctgccttcaagttcctctttggcaatgttacatt
cggttcatcagaaaggtctacgacaagaaaggagcagagggtcaagaggagaccacaaag
gctttcgagtttatgcttaactatattgggacagacatagcatcagggcctatatggact
gagtacattacctttctaaaatctcttccggctcttaacgcctacgaagattcgcaacga
ctccgaaaagtgtatcagagagctatattaactccgacccatcatgttgaacaactttgg
aaggattatgagaactttgaaaattctgttaaccgtcaattggcaaaaggacttgtaaat
gagtatcaaccaaaatttaacagcgccagagctgtatatagggagcgcaagaagtacatt
gaagaaattgattggaacatgcttgctgtcccaccaacaggatcttccaaggaagaaact
cagtgggtggcctggaaaaagtttttatcctttgaaaaaggaaaccctcaaaggattgac
acggcctcgtcaactaagcggattatatatgcctatgaacagtgtctgatgtgtttatat
cactttcccgatgtatggcatgactatgctgagtggcacgtaaaatctggttcctcagat
gctgcaatcaaagtatttcagcgagctcttaaagctattcctgattcagaaatgttgaaa
tatgcttatgctgagatggaggaatctcgtggagcaattcagtcagcaaagaaattatat
gaaagcattttgggagttagcacaaactctttggcacatatacaattccttcgttttctc
cgaagggccgagggtgttgaagctgctcgcaagtactttttagatgctagaaaatctcct
agctgcacatatcatgtgtatattgcttttgctacgatggtcttttgtcttgacaaggat
ccaaaggttgctcataaaatctttgaggagggattgaaactctatatgaatgaacctgtt
tacatccttgagtatgcagatttcttgactagattgaatgatgatagaaatatcagagct
ctatttgaacgagcattaagcactttaccagctgaagaatctgctgaggtctggaaaaga
ttcatacagttcgagcaaacatatggagatcttgctagtattttaaaggttgagcagaga
aggaaagaagcactttctggaaaaggggaagagggatcttctcctctagagagttcactt
caagacgttgtttctcggtacagttacatggatctttggccatgcagttttaaggagctt
gatcatttatccagacaagagttgcttgtgaagaatctgaataagaaagtagggaagaca
aatctacctcatggtcctgcagctataggtagtgtagcttcttcgtcgaaagttgtttat
ccagatacatctcagatggttgtttatgacccgacaaagaaatcagagtttgctagttct
acaaacccagtggcagtttctgcttcgaacaccttcccaagtattgtgactgcaactaca
actcatggatcagccagcacatatgacgaaataccaaaaactaccccacctgcattgtta
gcgtttttagctaacttgcctgttgttgatggtccaacacccaatgtggatgttgttctg
tcaatatgtttgcagagtgagttaccaacaagtcaaaatgtaaagcagaatttggttgcc
aaaggcaatgctccaagtcaaaacgagtcctcgggtccaaaccgtggtgggtctcaaaga
ttgtcaagagacagaagagctacaaagagaaaagattcagacaggcaagaagaagatgat
acagcaactgtacaaagccagcctctacccacagatgttttcagactaaggcagatgcgt
aaagctcgagggatctcaacatcatcacagacaccaaccggttccacatcgtatggtagt
gccttctccggggagctttctggtagcactggttaa
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