Capsella rubella (pink shepherd's-purse): 17900031
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Entry
17900031 CDS
T02984
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
17900031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crb03400
]
17900031
Enzymes [BR:
crb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
17900031
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
17900031
DNA repair and recombination proteins [BR:
crb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
17900031
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
NFACT_N
COMM_HN
Ribosomal_S13
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
17900031
NCBI-ProteinID:
XP_006304948
UniProt:
R0GPY7
LinkDB
All DBs
Position
Unknown
AA seq
396 aa
AA seq
DB search
MPELPEVEAARRAIEDNCIGKKIKRVIIADDSKVIDGISPSDFQNSVLGKTIVSARRKGK
NLWLELDSPPFPSFQFGMAGAIYIKGVAVTKYKRSAVKDSEEWPSKYSKFFVELDDGLEL
SFTDKRRFAKVRLLANPTSVRPISELGPDALLEPMTVDEFAESLAKKKITIKPLLLDQGF
ISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSITEVIEKAVEVDADSSQFPSNW
IFHDREKKPGKAFVDGKKINFITAGGRTTAYVPELQKLSGKDAEKAAKVRPGKRGVKSKE
DDGDGEEDEQESEKEDGSAKLKKGQKSRGVRGKKPAPKTKTEDSDEEDDDADGGDDSDTE
EKVVKPRGRGTKPAIKRKAEEKPTSQVGKKPKGRKS
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgccggagcttccggaagtagaggcggcgaggagagctatagaggataattgtattgga
aaaaagattaagcgggtcatcatcgccgacgacagcaaagtgatcgatggaatctcgccg
tccgatttccaaaactcagtcctcggcaagaccatcgtctctgctcgccgaaagggcaaa
aacctctggctcgagttagattccccgccctttccttctttccaattcggcatggctggt
gctatttatatcaaaggcgttgcagttactaagtataaaagatctgctgtcaaggactca
gaggagtggccatctaagtactcaaagttcttcgtcgagcttgatgatggtctggagctt
tcatttactgataagaggagatttgccaaagttcgacttctagcaaatccaacttctgtg
cgtccaatatcagagctcggtcctgatgcattgttggagcctatgactgttgatgaattt
gcagaaagcttagcgaaaaagaaaataaccataaagcctctcctacttgatcagggtttt
atttcaggtattgggaattggattgctgatgaagtgctgtaccaagccagaatccaccca
ttgcagactgcttctagtctctccaaagagcaatgtgaagctttgcacacatccatcaca
gaggtgatagaaaaagcagtggaagttgatgcagacagtagtcagtttcctagtaactgg
atttttcatgatagggaaaagaagccaggaaaagcctttgttgatgggaagaagattaat
ttcatcacagctggtggaaggacaacagcttatgtcccagagctgcagaaactttctgga
aaagacgcagagaaagcagccaaggttagaccgggtaaacgaggtgtgaaatccaaagaa
gacgatggagatggagaagaagatgaacaagaatctgagaaagaagatggcagtgcaaaa
ctgaagaaaggacagaaatcaaggggtgttcgtggtaagaagcctgcaccaaagacaaaa
acagaagatagtgatgaggaggacgacgatgctgatggtggagatgatagtgacactgaa
gagaaagttgtgaaacccagaggtcgtggtacaaagcctgctataaagaggaaagctgaa
gagaaacctactagccaagttggtaagaagccaaagggaagaaaaagttga
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integrated database retrieval system
