Capsella rubella (pink shepherd's-purse): 17900074
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Entry
17900074 CDS
T02984
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17900074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17900074
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
17900074
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
17900074
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
17900074
NCBI-ProteinID:
XP_023645535
LinkDB
All DBs
Position
Unknown
AA seq
646 aa
AA seq
DB search
MSSLLNSSINGSTSNLSDGSGRTFTSSFSGQSGAASPVFHHAGSIQGLHNIHGNFNVPNL
SGSLGSRNPGLNGVPSAGVQQQNGSISNGRFASSNIPVALSQISHGSSHGHSGLTNRGGI
SSAGNPKSVVTLIAFSRFFLRLPPIGKFFTIPGLGVSPILGNAGSRMTSSMGNMVGGGTM
GRNLSSGGGLSIPSLGSRMNMGVNSGSGNIGQNRLMGGVLPQGSPQVLSMLGNSYPTAGG
LSQNHVQAMNSLTSMGLLNEMNSNDTSPFDINNDFPQLTSRPSSASGQGQLGSRLKQGLG
ISPIVQQNQEFSIQNEDFPALPGYKGNNADYPMDMHHKEQLHENSILMMQSQQLSMGRSG
GFNLAGAYASHRPQQQHAQAVGSSGVSLHGSDIFSSSHPSYHSQAGGPPGIGLRSMNSSN
SVTGMGYDQQLIQQYQHQQNTSQYRLQQMSAASQPFREVGLKSTQVTQANPDRFGLLGLL
SVIKMTDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWSNEPSKGDPEFSVPQCYYSK
NPPPLHPGLFAKLLVETLFYIFYSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRIGESL
VKTNAYERGSYHCFDPNSFDIVQKENFVVYYEMLEKRPSLSQDSQH
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtttacttaattcctcaattaacgggtctacctcgaacttgtcggacggttca
gggagaacatttacttcttctttctctggtcagtctggggctgcgtctccagtcttccat
catgctggatcgattcaaggccttcacaatattcatggtaactttaatgttcccaatttg
tccggttcccttggatcaagaaatccaggtctaaatggtgttccttctgctggtgtccaa
caacaaaatggaagtatttcgaatggaagatttgcatccagcaatattccggttgcactc
tctcagatatctcatggtagctctcatggacactcaggactcactaacaggggaggtata
agttctgctggaaaccctaagtcagtagtaacactaatcgcttttagtagatttttccta
cgtttgccaccaattggtaaattttttactataccaggattgggagtttctccaattttg
ggaaatgcaggttctcgaatgacaagttccatggggaatatggtcggtggaggcacaatg
ggtaggaatttgagctctggaggaggattatcgattccgagtcttggttcgcggatgaat
atgggggtgaatagtggatctggaaatattggacaaaatcgcctgatgggcggggtcctt
ccacaaggatcaccgcaggttctttcgatgctgggaaattcttaccctactgctggggga
ctttcccaaaatcatgttcaagcaatgaacagtctaacctccatgggattgctgaatgaa
atgaactccaacgacacttctccatttgacataaacaatgattttcctcagctcacaagc
cgacccagctctgccagcggtcaaggacaattggggtctcgattgaaacaaggccttgga
atcagccccatagttcagcaaaaccaagagttcagtatccaaaatgaagattttccagca
ttgccaggatataaaggaaataatgctgattatccaatggatatgcatcataaagaacaa
ctccatgagaattcaattttaatgatgcaatctcaacaattatctatgggaaggtctggt
gggtttaacctagctggagcttacgcatctcatcgtcctcaacaacaacatgctcaagct
gtgggtagtagtggtgtctccttgcatggatctgacatcttctcatcttcgcatccatct
taccactcacaggctggtggaccaccgggtatcggattaagatctatgaattcttccaat
tctgtcactgggatgggttatgaccagcagcttatccagcagtatcagcaccaacagaac
acatcacagtatcgcttgcagcagatgtcggctgctagccaacctttcagagaagtggga
ttaaaatcaacgcaggtgacacaggcaaatcctgatcggtttggcttgcttggtttgctc
agtgtgataaagatgacagaccctgacttgacttctttggcacttgggattgatctgaca
acactggggttaaatttaaactcgacagaaaatcttcataagacttttggctcgccttgg
tccaatgaaccctctaaaggtgatccagaattcagtgtaccgcagtgttactactcaaaa
aaccctccacctctacatcctgggctttttgcaaaattattggtggaaacattgttttac
atattctatagcatgccaaaagatgaggcgcaattatatgcggcaaatgaactgtacaat
aggggttggttctaccacaaagaacacaggttgtggttcattagaatcggggaatctctt
gtgaaaacaaatgcgtatgaaagaggatcatatcactgttttgatccaaactcatttgac
atcgttcaaaaggaaaattttgttgtctattacgagatgctggaaaaaagaccatcccta
tctcaagattctcaacattga
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