Capsella rubella (pink shepherd's-purse): 17900117
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Entry
17900117 CDS
T02984
Name
(RefSeq) putative CCR4-associated factor 1 homolog 3
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17900117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17900117
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
17900117
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
17900117
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
17900117
NCBI-ProteinID:
XP_006304487
UniProt:
R0IGA9
LinkDB
All DBs
Position
Unknown
AA seq
293 aa
AA seq
DB search
MKKSSGEVWRWNKEVEMNAISDGLRNCCFIAVDTEFPGCLVETPIEASEESRYTDMIFNV
DNTKLIQLGFTMLDGQGRTLGTWEVNFSDFDESKDVKNEKSIAFLRSHGLDLDRIRDEGV
GINEFFWEFSNILMDKDKKISWVTFQGLYDEAYLVKGFTGGGPLPESPQGFAEAVETLLG
DVFDVKKIARLCSGLSSHYGLQKIADAFQMKRVGKAHHAGSDSELTARVFTKMACGLHDA
QKRRQSLFRADQQYQDQLMMTTSYLPQLPPSQIPMNFDAYPPFGGYFGLPAKE
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaagtagtggcgaagtttggagatggaacaaagaagttgagatgaatgcaata
agcgatggtttgagaaattgttgtttcatcgctgtagatacagagttccctggatgttta
gtggagactcccatagaagcgagtgaggagtctcggtacacagacatgatatttaacgtc
gacaataccaaactgattcaattgggttttacgatgttggacggtcaaggaagaaccctt
ggaacatgggaggttaatttctctgattttgatgaatccaaggacgtcaagaacgagaaa
tctatcgcgtttcttagaagtcatggcctcgatctggacaggataagagatgaaggagtt
gggattaacgagttcttctgggagttttctaacattcttatggacaaggacaagaagatt
agttgggtgacttttcagggattgtacgacgaggcttatctagttaaaggcttcaccgga
ggaggaccgttgcctgagtctccacaaggctttgcggaagctgtcgagacgcttttggga
gatgtctttgacgtcaagaaaatagctcggctatgcagcgggttaagtagccattacgga
ctacagaaaatagcagatgcgtttcagatgaagcgtgtcggaaaagctcatcacgctggc
tctgacagcgagctcacggctcgtgtcttcaccaagatggcttgtggtctgcatgatgcc
caaaagagaaggcagagtctttttagagctgatcagcaatatcaagatcagcttatgatg
actacaagttatttaccacagctgcccccgagccagataccgatgaacttcgatgcttac
ccgccttttggtggttactttgggttgccggccaaggaatga
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