Capsella rubella (pink shepherd's-purse): 17900129
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Entry
17900129 CDS
T02984
Name
(RefSeq) probable pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17900129
Enzymes [BR:
crb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
17900129
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Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
17900129
NCBI-ProteinID:
XP_006307575
UniProt:
R0ISX7
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All DBs
Position
Unknown
AA seq
431 aa
AA seq
DB search
MAVLPTWVLAMLCLLFVVGAMDNTTHDKISSLPRSDDSEWNQHAVTNPDEVADEVLAMTE
MSARNHTERRKLGYFTCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFY
VVTDPRDDNPVNPRPGTLRHAVIQDRPLWIVFQRDMVIQLKQELIVNSFKTIDGRGANVH
IANGGCITIQYVTNVIVHGLHIHDCKPTGNAMVRSSETHFGWRTMADGDAISIFGSSHVW
IDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVMLLGHSDSYMRDKAMQVTIAYNHF
GVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPKNPFAKEVTKR
VDTPASHWKGWNWRSEGDLLQNGAYFTSSGAAASGSYARASSLSAKSSSLVGHITSDAGA
LPCRRGRQCSS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcttcccacatgggttttagcaatgttgtgtctactctttgtcgtcggagca
atggacaacactacgcacgacaagatctcatctctccctagatccgacgacagcgagtgg
aaccaacacgcagtgacgaatccagatgaagtcgctgacgaagttctcgccatgactgaa
atgagtgcgagaaaccataccgagaggaggaaactgggttactttacttgcggtacaggc
aaccctatcgacgactgttggcggtgcgaccgcaactggcacaagaaccgcaaacgctta
gcggactgcgggatcggatttggaagaaacgccattggtggtcgcgacgggcgtttctac
gttgtcactgacccaagagacgacaatccggttaatcctagaccggggactttacgtcac
gccgtgatccaagaccgaccgttatggatcgttttccaacgcgatatggtgatccagttg
aaacaagagctcatcgttaacagcttcaaaacgatcgatggacgaggcgcaaacgtccac
atcgctaacggcggttgcatcacgattcagtatgtaacgaacgtgatcgtccacggattg
catattcatgattgtaaacccactggtaacgctatggtgagaagctctgagacccatttt
gggtggaggaccatggcggatggtgatgctatttcgatctttggctcgagtcatgtatgg
attgatcacaactctttgtctcattgcgctgacgggcttgtcgacgcagtcatgggctca
accgcgatcaccatctctaacaaccacttaactcaccacaacgaggtcatgttgctcgga
cacagcgattcgtacatgagggacaaagctatgcaagtgaccattgcttataatcatttt
ggagtcggacttattcaaagaatgccgaggtgtcgacacgggtacttccacgtcgtgaac
aacgactacactcactgggaaatgtacgccattggtggaagcgcaaacccgacaatcaac
agtcaaggaaaccgctacgccgccccgaaaaacccttttgccaaagaggtgacaaagaga
gtggacacaccggctagtcattggaaaggatggaactggagatcggaaggagatttgctt
cagaatggtgcttatttcacttcttcaggagctgccgcgtccggaagttacgcacgtgcc
tctagtctctccgcgaaatcttcttcattggtcggacacattacttccgacgccggagct
ctaccttgtcgcagaggacgtcaatgttcatcatag
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