Capsella rubella (pink shepherd's-purse): 17900148
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Entry
17900148 CDS
T02984
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X3
KO
K13217
pre-mRNA-processing factor 39
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crb03041
]
17900148
Spliceosome [BR:
crb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
17900148
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_16
UTP6_C
TPR_12
TPR_10
Motif
Other DBs
NCBI-GeneID:
17900148
NCBI-ProteinID:
XP_006304405
UniProt:
R0IJZ4
LinkDB
All DBs
Position
Unknown
AA seq
826 aa
AA seq
DB search
MGDSEAMVAEGYTSAAYGGYNASSATEESTGQETAPNVDPSHPVNNDALVNGTGHGVETV
PAENGSVTDNVAVTAPAAEHGDNLGSTLSPEEERLWNIVRANSLEFNAWTALIEETERIA
QDIIAKIRKVYDAFLAEFPLCYGYWKKYADHEARVGAMDKVVEVYERAVQGVTYSVDIWL
HYCTFAINTYGDPDTIRRLFERALVYVGTDFLSSLLWDKYIEYEYMQQDWSRLAMIYTRI
LENPIQNLDRYFGSFKELAETRPLSELRSAEEAAAATAGVDTSESAPSESGGKADEGQSQ
ADSSTEKSPKLESAGSTDPEELKTYVGIREAMYIKAKEFESKIIGFEMAIRRPYFHVRPL
NVAELENWHNYLDFIEKDGDFNKLSSIWCIICLIGFPLDQATFKWEITETKAWGSICSNV
INAGVFLTICLSGMEGPSVVKLYERCVVACANYPEYWIRYVLKMKASGSTDLADNALARA
TQVFVKKQPEIHLFAARLKEQNGDIAGARAAYQLVHSEISSGLLEAVIKHANMENRLGNL
DDAFTLYEQVIAVEKGKEHSPLLPLLYAQYSRFSYLISRDAEKARRILVEALDHVQPSKL
FMEALIHFETIQPPPRQIDYLEPLVEKIIKPDVDSQNIASATEREELSLIYIEFLGLYGD
VKSIEKAEDQHAQLFLPRRSTSELKKRSADDFLSSDRTKMAKTYNGTPPAQPVSNAYPNT
QTQWSGGYAAQPQTWPPTQAAPAQPQQWNPTYGQQAAYGAYGGYPAGYTAPQAPPPVPQA
AAYGAYPAQTYPTQSYAPPVAAAAPVAAPVQQPAAAAPQAYYNAYY
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgggagacagcgaggccatggttgccgaaggatatacttctgctgcatatggaggttat
aatgcttcttctgccactgaggaatcgacagggcaagagactgcaccgaatgttgatcca
tcacacccggtcaataatgatgctttggtcaatgggactggccatggagttgaaactgtg
ccagctgagaatggaagtgtaacagataatgtggctgtaacagctccagcagcggagcat
ggagacaatcttggctctactctctcaccagaagaggagcgcttgtggaatattgtaagg
gctaattccttagagttcaatgcttggactgccctgattgaagagacggagaggatagct
caggacattatagcaaaaatccgaaaggtgtatgatgctttcctagctgaatttcctttg
tgttatggctattggaaaaagtatgcggatcatgaggctcgagttggggcaatggacaag
gtggtggaggtttatgaaagagcagtgcagggagtgacttattcagtggacatctggttg
cattattgcactttcgccatcaacacatatggagatccagacacgatcagaaggcttttt
gaacgggctctggtttacgttggaactgattttctttcctctctattgtgggacaaatac
atcgagtacgagtacatgcagcaggactggagccgacttgcgatgatatataccagaata
ttggagaatccaattcaaaatcttgatagatatttcggcagttttaaggaactagctgag
acacggcctctatcggaactcaggagtgctgaggaagctgcagcagcaactgctggtgtt
gatacttctgaaagtgcaccatctgagtctggtggaaaggcagatgaaggacaatcccaa
gctgatagttctaccgaaaaatcccctaaactggaaagtgctggttcaactgatcctgag
gagttgaagacatacgttggcatcagagaagccatgtatatcaaagcaaaagagtttgaa
tccaaaataattggctttgaaatggctataaggaggccctatttccatgtgcggcctctc
aatgtcgctgagctggagaactggcacaattatctggacttcatagaaaaggatggagat
ttcaataagttaagtagtatctggtgcatcatatgcttgattgggtttccattggatcaa
gcaacttttaaatgggaaataactgagaccaaagcatggggctcgatttgttccaatgtt
attaatgcaggtgtcttcctaacaatctgtctgtcaggcatggagggtccctctgtggtc
aagctttatgaaagatgtgtggttgcctgcgcaaattacccagaatactggattcgatat
gtattaaagatgaaagcaagtggaagtacggaccttgcagataatgccctcgctcgagca
actcaagtctttgtcaagaaacaaccagagattcacctttttgctgctcgattgaaagag
cagaatggggatatagctggtgcaagagctgcataccaattagtgcactctgaaatttca
tctggacttcttgaagcagtaatcaaacatgcgaacatggagaaccgactaggtaatctg
gatgatgctttcactttgtatgagcaagtaattgctgttgaaaaggggaaagaacattcc
ccattactgccactgctgtatgctcagtattcaaggttttcatacttgatttccagggat
gctgagaaagctaggaggattttagtcgaagcacttgaccatgtacaaccatcaaaactt
ttcatggaagcactaattcattttgagacaattcagccaccaccaagacagattgattac
cttgagccacttgtcgaaaaaattatcaagccagatgttgattcccaaaacattgcaagt
gccactgagagggaagagctatctttaatatatatagagttcttgggtctttatggagat
gtgaagtccatagagaaagcagaagatcaacatgcgcaactgtttttacctcgtcggagc
acatcagagctgaaaaagcgtagcgcagatgattttctctcatcagataggacaaaaatg
gcgaaaacatacaatggcactccacctgctcagccagtatccaatgcatatccaaatact
cagactcaatggtctggtggttatgctgcgcagcctcagacttggccaccaacacaagct
gctcctgctcaaccgcagcaatggaaccctacttacggtcaacaggctgcttatggtgca
tatgggggatatcccgccggctataccgccccacaagcaccaccacctgtgccacaggct
gctgcttatggtgcatatcctgctcagacatacccaactcagagctatgcacctccagtt
gcagctgcagcaccagtggctgcgccggtgcagcaacctgctgctgctgctccacaagct
tactacaatgcgtactactga
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