KEGG   Capsella rubella (pink shepherd's-purse): 17900286
Entry
17900286          CDS       T02984                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb03030  DNA replication
crb03410  Base excision repair
crb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:crb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    17900286
   03410 Base excision repair
    17900286
   03420 Nucleotide excision repair
    17900286
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:crb03032]
    17900286
   03400 DNA repair and recombination proteins [BR:crb03400]
    17900286
Enzymes [BR:crb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     17900286
DNA replication proteins [BR:crb03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    17900286
DNA repair and recombination proteins [BR:crb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      17900286
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE DNA_pol_B_exo2 zf_DPOE_2 RNase_H_2
Other DBs
NCBI-GeneID: 17900286
NCBI-ProteinID: XP_006306574
UniProt: R0GU64
LinkDB
Position
Unknown
AA seq 2163 aa
MSGDNRRRDRKDSRWSKKPKVVNTAEDELESKLGFGLFSEGETRLGWLLTFASSSWEDRD
TGKVFSCVDLYFVTQDGFSFKTKYKFRPYFYAATKDKMELEVEAYLRRRYERQVADIEIV
EKEDLDLKNHLSGLQKKYLKVSFDTVQQLMEVKRDVLHIVERNQAKFDALEAYESILAGK
REQRPQDCLDSIVDIREYDVPYHVRFAIDNDVRSGQWYNVSISSTDVILEKRSDLLQRAE
VRVCAFDIETTKLPLKFPDAEYDQIMMISYMVDGQGFLITNRECVGEDIEDLEYTPKPEF
EGYFKVTNVKDEVELLQKWFSHMQELKPGIYVTYNGDFFDWPFIERRASHHGIKMNEELG
FRCDHNQGECRAKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVKF
AQEKPQTMASYSVSDAVATYYLYMTYVNPFIFSLATIIPMVPDEVLRKGSGTLCEMLLMV
QAYKANVICPNKNQADPEKFYQNHLLESETYIGGHVECLESGVFRSDIPTSFKLDSSGYQ
QLIDNLGRDLEYAITVEGKMKMDSISNYDEVKDEIKEKLEKLRDDPIREEGPLIYHLDVA
AMYPNIILTNRLQPPSIVTDEVCTACDFNSPGKTCLRKLEWVWRGVTFMGKKSDYYHLKK
QIESEFVDAGANIQSSKSFLDLPKVEQQTKLKERLKKYCQKAYKRVLDKPITEVREAGIC
MRENPFYVDTVRSFRDRRYEYKTLNKVWKGKLSEAKASGNSIKIQEAQDMVVVYDSLQLA
HKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIERIGKPLELDTDGIWCC
LPGSFPENFTFKTMDMKKLTISYPCVMLNVDVAKNNTNDQYQTLVDPERKTYTSHSECSI
EFEVDGPYKAMIIPASKEEGILIKKRYAVFNHDGILAELKGFEIKRRGELKLIKVFQAEL
FDKFLHGTTLQECYSAVAAVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQ
KSCAVTTAKRLAEFLGDSMVKDKGLRCQYIVACEPKGTPVSERAVPVAIFETTKPGIMKF
YLRKWCKTSSDVGIRLIIDWSYYKQRLSSAIQKVITIPAAMQKVANPVPRVNHPDWLHKK
VREKEDKFRQRKLVDMFSSANKDCVLDPDPLVTQVNMEDIEDFCKENRPSVKGPKPIARS
FEVKKKQSEHEQKESCDPDFHDISFQNIDKNLNYQGWLELKKRKWKITLEKNKKRRLGDV
RSSKQIDAHEINQKVGLGRGGVSSYFRRPEEALTSSYWQILQLVPSPLSGQFFAWVVVEG
LMLKIPLTIPRVFYVNSKAPTVEKFPGKCVNKILPHGRPCYNLIEVKIQEDQFKEESKMR
AALLANPEIEGIYETKVPLEFSAICQIGCVCKIDNTAKHRNTQDGWKVGELHMKTTTECH
YLERSIPLVYLYNSTSAGRALYVLYCHASKLMSVVVVDPFSSKELLPSSLERQFRDSCQE
FSINTLSWGSIVFQVEYVDHPEAAKKIIQKAISEYREENCGPTVAVIECPDFNSMKEGLK
ALDDFPCVRIPFNGDDNSYQPVSWQRPTAKIAMFRCAAAFQWLDRRIAQSRYAHVPLGNF
GLDWLTFTIDIFLSRALRDQQQVLWVSDNGVPDLGGINNEEAFFADEVQQTSLVFPGAYR
KVSVELKIHNLAVNALLKSNLVNEMEGGVFLGFEQDVNPRGINSDDNTSFDETTGCAQAF
RVLKQLIQSCLADVRKYDNIYADSILQRLSWWLCSPSSKLHDPALHLMLHKVMQKVFALL
LTDLRRLSAIIIYSDFSKVIIDTGKFDLSAAKAYCESLLAAVGNSDIFEWILLEPVHYWH
SLLFMDQYNYTGIRVTDDESSPDEVAIEPKWCVARHLPEYIKSDFDIIVAKFIFDPWKFA
LEKKKGSSESLEAQMVEYLKEQIRPNFINMLFKKVDDIMSHMKEINVSDVSRVSGQATKG
DYTLEFIQIISAVLALDQNVEQEVLVMRKNLLKYINVKEFSAEAEFLDPGPSCILPNVAC
SNCDAYRDLDLCRDPDLLTEKEWSCADTHCGKIYNREQMENSLLQMVRQRERMYHMQDLV
CIRCNQVKAAHLTEQCECSGSFRCKESGSEFHKRMEIFLDIAKRQRFKMLEECTSWILQF
TSC
NT seq 6492 nt   +upstreamnt  +downstreamnt
atgagcggggataatcgaagacgggatcgaaaggactcacggtggtcgaagaagcccaaa
gtagttaacactgcagaagatgaactcgaatctaaactcggatttgggcttttctctgaa
ggtgaaacgcgacttgggtggctactcaccttcgcatcgtcatcttgggaagatcgcgat
actgggaaagtctttagttgcgtggacctttactttgtaactcaggatgggttttctttc
aagaccaagtacaagttccgcccttacttctatgctgccaccaaagacaagatggaattg
gaagttgaagcctacttgagacgccgatatgaaagacaagttgctgatatcgagattgtt
gaaaaagaggatcttgatcttaaaaatcatctatctggcctgcaaaagaaatatttaaaa
gtatcatttgatactgtgcaacaattgatggaagtcaagagggatgtgttgcacattgtc
gaacgaaaccaggctaaatttgatgcacttgaagcttacgagtccatattggctggaaaa
cgagaacaacgtccacaagattgcttagactctattgtggacatccgcgagtacgatgtc
ccttatcatgttcgatttgcaattgataatgatgtgaggagtgggcaatggtacaatgtc
agtatttccagcactgatgtcatactagagaagaggtcagatcttcttcaacgcgcagaa
gttcgtgtttgtgcattcgatattgagacaacaaagcttccgttaaagtttccggatgct
gaatatgatcaaattatgatgatatcctacatggttgatggacaaggttttctaattact
aacagagagtgtgttggcgaagacatagaagatctggaatatacacccaaaccagaattt
gaaggctatttcaaagtgactaatgttaaagacgaggttgaactcctccaaaaatggttt
tctcatatgcaagagttgaaacctggtatatatgttacatacaacggtgacttttttgac
tggccatttatagaacggagagcatctcatcatggaataaaaatgaatgaggaattggga
ttccgttgtgatcataatcaaggtgaatgtcgagctaaatttgcttgccatttggattgt
tttgcttgggtgaaacgtgatagctatcttcctcagggaagccatggtctgaaggctgtt
acgaaggcaaaactgggttatgatcctctggaagtaaacccagaggacatggttaagttt
gcgcaggaaaagccacagacaatggcctcctactcagtctctgatgctgttgcaacttat
tacctatacatgacatatgtcaatccgttcattttttctctcgcgactatcatcccaatg
gtccctgatgaggttttacgcaaagggagtggcacgctttgtgaaatgcttttgatggtt
caggcttacaaggcaaatgttatatgtcccaacaaaaatcaagctgaccctgagaaattc
taccaaaatcatcttcttgaaagtgagacatatattggtggtcatgtagagtgcctcgaa
agtggtgttttcagatctgatattccaaccagttttaagctcgattcatcgggataccag
caactaattgataaccttggtcgggatctggaatatgcgatcactgtagaagggaaaatg
aaaatggattcaatttccaattatgatgaagtgaaggatgaaatcaaggaaaagctcgag
aaattacgagatgaccctatacgtgaagaggggcctcttatatatcacctcgatgtcgca
gcgatgtatccaaatatcattttaacaaacaggcttcagccaccatcaatagttacggat
gaggtttgcacagcatgtgacttcaacagccccggaaagacctgtcttcgaaaacttgaa
tgggtttggcgtggggtgacattcatgggaaagaaaagtgactattaccatttgaagaag
cagatcgagtcggaatttgttgatgctggtgcaaatattcagtcttcaaaatcattcctt
gatctgccaaaggtggaacaacaaactaagctaaaagaacgacttaaaaaatattgtcaa
aaggcatataaacgagtactcgacaagccaattactgaagttcgtgaggctgggatatgc
atgagagaaaaccctttctacgtggacactgttcggagctttcgagataggaggtatgaa
tacaaaacacttaataaggtctggaagggaaagttgtctgaggccaaggcaagtggtaat
tcaatcaagatccaggaagcacaggacatggtagtcgtttacgattccttgcagctagct
cataagtgtatacttaattccttctatggatatgtcatgcgaaagggtgcaagatggtac
tccatggaaatggctggtgtagttacctatactggagccaaaatcatccagaatgcccgt
ttgcttattgagcgaattgggaaaccgcttgagttggatacagatggtatatggtgttgt
ctccctggatcttttcctgagaactttacatttaaaacgatggacatgaagaaactcaca
atctcttatccttgtgtaatgcttaatgttgatgtggcaaagaataatacaaatgatcaa
tatcagactcttgtagatcctgaacgcaagacgtatacgtcacatagtgaatgctcaatt
gaatttgaagtggatggaccgtacaaggcaatgattattcctgcctcgaaagaagaagga
atcttaattaagaagcgctatgctgttttcaatcatgatggaatcttagcagaactcaag
ggttttgagatcaagcgtagaggggagctaaaactcattaaagttttccaggccgagctt
tttgacaaatttctccatggaacaactcttcaagagtgctattctgctgttgcagccgtc
gcaaatcggtggcttgacctactcgataatcaaggaaaagatattgccgatagtgaactg
ttagattatatatcagaatcaagcacaatgagcaaatcgttagcagattatggtgagcaa
aagtcatgtgctgtgaccacagcaaaacgcctggctgaatttcttggtgattcaatggtc
aaagataaaggactgcgttgccaatacatcgttgcttgtgaaccaaaggggacacctgtt
agtgaacgtgctgttcctgttgctatatttgaaacaacgaagccgggaattatgaagttt
tatctgcgaaaatggtgcaagacatcatcagacgtcggaattcgtttaattattgactgg
tcgtattataagcagcgccttagttcagctatccaaaaagttattaccattcctgctgca
atgcagaaggtagcaaatcctgtacctagggtgaatcatcctgattggctccacaaaaag
gtccgtgagaaagaggacaaatttcgccagagaaaactagttgatatgttcagttcagca
aacaaagattgtgtgttggacccagatcctttggtgactcaagttaatatggaagatatt
gaggatttttgcaaagaaaacaggccttccgtaaaagggccaaagccaattgcacgttct
tttgaagtcaagaaaaaacagtctgaacatgaacagaaagagagctgcgatccagacttc
catgatatctcatttcagaacattgacaagaacttaaattaccaaggatggcttgaactg
aaaaagagaaaatggaaaataacattagagaagaataaaaaacgaaggttgggtgatgta
agatcttctaagcagatcgatgctcatgagataaatcaaaaagtcggtctgggaagagga
ggtgtaagttcatactttaggaggccagaagaagcattgactagttcatattggcagata
ctacagctggtcccaagtccactgagtgggcaatttttcgcttgggtggttgtggaagga
ctgatgcttaagatcccattgacaatcccaagggtgttttatgttaattccaaagctccg
acagtagaaaagttcccgggaaagtgtgtcaacaagattcttcctcatggaaggccttgt
tataatttgattgaggtcaagattcaggaagatcaatttaaagaagaaagcaaaatgcgt
gcagctcttcttgccaaccctgaaattgagggcatatatgaaacgaaggtgcctctggag
tttagtgctatatgtcagattgggtgtgtatgcaaaattgataacacagccaagcaccgt
aacacccaagatggatggaaagttggtgaacttcatatgaaaactacaactgaatgtcac
tacctggagcgttcaattccacttgtttacttgtataacagtacctcagcagggcgtgct
ctatatgttttatattgtcatgcgtcaaagcttatgtctgtcgtggtagttgatcctttt
agcagcaaggaattattaccatcttccctagagagacagtttagagatagttgccaagaa
ttttcaattaatacattgtcttggggtagtatcgttttccaggtggagtatgttgaccat
cccgaagctgccaagaagattatacaaaaagcaataagtgaatacagagaagaaaattgt
ggaccaactgttgctgtcattgaatgccctgactttaactccatgaaggaaggtcttaag
gccctagatgattttccatgtgtgaggattcccttcaatggcgatgacaatagttatcag
cctgtctcctggcaacgtccaacagcaaaaatagcaatgttccgttgtgctgcagcattt
cagtggttggatcggaggattgcccaatcaagatacgcccatgtgcctctggggaatttt
ggacttgattggctaacattcacaatagatatcttcctgtccagggcactccgtgaccag
caacaggtcctttgggtgtcagataatggtgttccagaccttggaggtataaacaatgaa
gaggcattctttgctgatgaggtacaacagacaagtttggtattccctggagcatataga
aaagtgtctgtggagctaaagatccataacttggctgttaatgcccttctgaaaagcaac
ctggtgaatgaaatggaaggaggggtctttttgggatttgaacaggatgtgaatcctaga
ggaattaattcagacgataacaccagttttgatgagaccactggatgtgctcaagcattt
cgtgtcctgaaacaattgattcagagttgcttggctgatgtgcgtaaatatgacaatata
tatgctgattccattttgcaacgtttatcttggtggctctgcagcccttcctctaagctc
catgatccagctcttcatctcatgcttcacaaggtcatgcaaaaggtgttcgcattgcta
ttgactgatttgcggagattgagtgctataataatatattcagacttctcaaaggtcatt
atcgacacagggaaatttgatctatctgctgctaaggcctattgtgaaagcttgcttgca
gcggtggggaatagtgatatctttgagtggatattgctcgagccggttcactactggcac
tcgctacttttcatggatcagtataactacactggtatccgagttactgatgatgaaagt
tcacctgacgaagtggctattgaaccaaagtggtgtgttgcacgacacttacccgagtat
attaagagtgattttgatataatcgttgccaagtttatatttgacccctggaaatttgca
ttagagaagaaaaaggggagttcagagagtttagaggcacagatggtagaatacctaaaa
gaacagattcgacccaacttcataaatatgctttttaagaaggtcgatgatatcatgtca
cacatgaaggagataaacgtttcagatgtatctcgggtttctggtcaagctaccaaagga
gattacacgttagaatttatacagattatctctgctgttctggctcttgaccaaaatgtc
gagcaagaggttctggtaatgagaaagaatctgttgaagtacattaacgtaaaagagttt
tctgctgaagccgaatttcttgatcctgggccctcctgcatcttaccgaatgttgcttgc
agcaactgcgatgcctacagagacctagatttatgcagagacccagatctattaacagag
aaagaatggtcatgtgcggatacacattgtgggaaaatatataacagagagcagatggag
aatagtcttcttcagatggtgagacagagagagagaatgtaccatatgcaggatctagtc
tgcattaggtgcaatcaggtgaaagccgcccatttgacagagcagtgtgagtgttctggt
tcctttagatgcaaggagagcgggtcagagttccacaagaggatggagattttcttggat
atagcaaaacgtcaaaggtttaaaatgttagaagaatgtacctcttggattttacaattc
accagctgctga

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