Capsella rubella (pink shepherd's-purse): 17900408
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Entry
17900408 CDS
T02984
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3 isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
17900408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crb03400
]
17900408
DNA repair and recombination proteins [BR:
crb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
17900408
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
DEAD
Motif
Other DBs
NCBI-GeneID:
17900408
NCBI-ProteinID:
XP_023645813
LinkDB
All DBs
Position
Unknown
AA seq
1545 aa
AA seq
DB search
MLWLWHHAFFMSLSLSAHHFSSVPSSETSKFSKVLDTVITLHHLPLKPLRKIHFSLSKDL
CFALMEWIGKRVKSRSWQRLQVVNKRKKMEIEAPVTSPPKRRKQIRRLDPDSDIEDITPT
YNNRVPPVQENDRHSAGLRAGSVQNNSVKESFSRIIRDLNVGKSGPSSSKFRDGSELNTC
VKESSFRVNDLDVVNTSVPSSFEFRDVSEQNTCVKEKCSPETRDLDVEKSGPSSPKLRDV
SEQNTCEKEKCSPKSTDLDVEKSGPSSSKLRGVSEQNTCVKEKCSPEIRDLDVEKSGPSS
SKLRDVSEQNTSVNEKCSPEIRDLDVGIPVPSSSKLIEVSEQNMCVMEMCSPDTRGLVVQ
KSLPGEIEILSDSESETEARAPAKKKLFVDSSRIVESISDGGDSTSESEGEEEENQESEE
NNTKDDISVESLSSEDPSFSSSSSSPSSSSSSSSDDAYNLKEVVEDNTDDDDFLKVSSPV
RNVSIAERKPLVRYKRSGSCLTKPRKEYKKIRKLNRQEDEEERLKVVEIVTKPPSNPVFT
CAHCGKENTGVLETHSSFIQPHALRDEIEDVNNFASTNASKYEDSVSINSGKSLEEPSRP
KLENPKTGKEVKTLVNLSTSRPEIFTSGKSKEVEAPEKPSTYRPDILSSGKTKEVQALEK
PSRPEIKNSEKRKEVQGNNKLGSVIPAVAVAGGLSKSLLANEPLDGQSDSSISSADKSGY
ESDPSLKDKEIKTNNNSDWRVLNGNHKEVDLFRLLVNSVWEKGQLGDEEAEQLFSLPGDQ
YQEHSMEDQRRYDDDGLLIIRPPPLIERFGMEEPQSPPEISESDLEVQKLWEELAFYNKS
IDVSNEVPSNVEIEISTDETPAAQCRKGNHDLCLDLEIGLKCVNCGFVQREIRSMDESEW
GEKITRERRKSDRYDEEEFSNLIGKLGIEAPNMNSLDGGCVSSEGTVWDKIPGVKSQMYP
HQQEGFEFIWTNLAGTIFLNKLKDFENSDETGGCIMSHAPGTGKTRLTIIFLQAYLACFP
DCKPVIIAPASLLLTWAEEFKKWNISIPFHNLSSLEFTGKENAAALGLLMQKNATARSNN
EIRMVKIYSWIKAKSILGISYNLYEKLAGVKDEDKKTKTVREVKPDKESEDIREILMGRP
GLLVLDEAHTPRNQRSCIWKTLSKVETQKRILLSGTPFQNNFQELCNVLGLARPKYLEKL
TATLKKSGMTVTKRGKKALGNEINNRGIEELKTVMLPFVHVHKGSILQRSLPGLRECVVV
LNPPELQKRVLESIEVTHNRKKINVFETEHKLSLVSVHPSLVSRCKLSAKESLTIDEALL
AQLKKVRLDPKQSVKTRFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKHLVSRFKWNPGE
EVLYMHGKLEQKQRQTLINEFNDPKSKAKVFLASTKACSEGISLVGASRVILLDVVWNPA
VERQAISRAYRIGQQRIVYTYHLVAKGTPEGPKYCKQAQKDRISELVFACSSRPDKGKEK
IAEAVTEDKVLDTMVQRSKLGDMFDNLIIQPKEADLVEGFSILMP
NT seq
4638 nt
NT seq
+upstream
nt +downstream
nt
atgctttggctttggcatcacgctttcttcatgtctctttctctctccgcccatcacttc
tcttctgtcccatcttccgaaactagtaagttctcaaaagtcttagatacagtcattaca
cttcatcatcttcccctcaaaccccttaggaagattcatttttccttgtccaaagatctt
tgttttgctctaatggagtggattgggaagagagttaagtcccggagctggcagcgtctt
caggtggttaataagcggaagaagatggagatagaagctcctgtgacttctcctccaaag
agacgaaaacagataagaagactagaccccgattctgacattgaggacatcacacctact
tacaacaaccgtgttcctcctgttcaagaaaatgacaggcactctgctggtttaagggct
gggtctgttcagaacaactctgtcaaggagagcttctctaggattattagggatctgaat
gtggggaaatcaggtcctagctcctctaagttcagagatgggtctgagctaaacacgtgt
gtgaaagagagttcttttagggttaatgatttagatgtggtgaatacatcagttcctagc
tcttttgagttcagagatgtgtctgaacagaacacatgtgtgaaggagaagtgttcccct
gagactagagatttggatgtcgaaaaatcaggtccgagctctcccaagttaagagatgtg
tctgaacagaacacatgtgagaaggagaagtgttcccctaagagtacagatttggatgtg
gagaaatcaggtccgagctcctctaagttaagaggtgtgtctgaacagaacacatgtgtg
aaggagaagtgttcccctgagattagagatttggatgtggagaaatcaggtccgagctcc
tctaagttaagagatgtgtctgaacagaacacatcggtgaatgagaagtgttctcctgag
attagagatttggatgttggaataccagttccgagctcttctaagttaatagaggtgtct
gaacagaacatgtgtgtgatggagatgtgttccccggatactagaggtttggttgtccaa
aaatcactccctggtgaaatagagattctttcagattctgagtctgaaactgaagccaga
gctccagccaagaagaagctttttgtggacagtagcaggattgtagaatctatcagtgat
ggcggagatagcacaagtgaatctgagggagaggaagaagaaaatcaagagagtgaagag
aataataccaaagatgatatatcagtcgagtctctatcttctgaggatccatctttttca
tcatcatcatcatcgccttcatcttcatcttcttcctcgagtgacgatgcatacaattta
aaggaggtggttgaagataatactgatgatgatgatttcttaaaggtcagttcaccagtc
aggaatgtctctattgcggaaaggaagcctttggtaaggtataagaggtctggttcttgc
ttaaccaagcctagaaaagagtacaagaagattcggaaattaaaccgtcaagaagacgaa
gaagaacgacttaaagtagttgaaatagtaacaaagccgccgagcaacccggtgttcact
tgtgctcactgtggaaaagagaatacaggagttcttgaaactcacagctctttcatccaa
ccacatgcattaagagatgaaattgaggatgtgaacaactttgcttctactaatgcatca
aagtatgaagattctgtttccatcaactctgggaagtcacttgaagagccatcaagacct
aaactggagaatccaaagacaggaaaagaagtgaaaacacttgtgaatctatccacatcc
agacctgaaattttcacttcagggaaatctaaagaggtagaagcacctgaaaagccatcc
acatacagacctgatattcttagttcagggaaaacaaaagaggtgcaagcacttgaaaag
ccatcaagacctgaaatcaagaattcagagaaaagaaaagaggtccaaggcaacaacaaa
ttggggtcggtgatacctgcagttgcagttgcagggggattaagtaagtctcttttggct
aatgaaccacttgacggccagtctgattcttctatcagctctgcagataaatctggatat
gaatctgacccttctttaaaagataaagagatcaagactaataacaactcggactggaga
gtattaaatggaaaccataaagaagttgatctcttccggcttcttgtgaactctgtttgg
gagaaaggtcaattaggagatgaagaagcagaacaactattttctttacctggggaccag
tatcaagaacattctatggaggatcaaagaagatatgatgatgatggacttctaatcatt
aggccaccaccattgatagagagatttggtatggaggaacctcaatcaccacctgagatt
tctgagtcggatttggaggtacagaagctctgggaagaactagcattttacaataaatct
atcgacgtcagcaacgaggtcccttcaaatgtcgagattgaaatatcaactgatgaaact
ccagcagcacaatgtagaaaaggaaatcacgatctgtgtcttgatcttgagattggtttg
aagtgtgtgaactgcggcttcgtgcagagagagatccgaagcatggatgaatctgagtgg
ggagagaagatcacaagggaaaggagaaagtctgatagatatgatgaggaagaattcagc
aacctcattgggaaacttgggattgaagctcctaacatgaacagcttagatgggggatgt
gtttcttctgaaggaaccgtttgggataagatcccaggggtcaaatctcaaatgtatcct
caccagcaagagggttttgagtttatttggacgaatttagctggtacaatctttttgaac
aagctcaaggactttgagaacagcgatgaaaccggaggatgcatcatgtcacacgctccc
gggacaggaaaaactcgcctgaccatcattttccttcaagcctaccttgcatgcttccca
gattgcaaaccagtgatcattgctcctgcaagcttgcttctcacatgggcagaggagttt
aagaaatggaacataagcattccttttcataatctcagcagtttggagtttaccggaaaa
gagaacgcagcagcgctgggacttttaatgcagaagaatgccactgctagaagcaataat
gagataaggatggtgaaaatatactcttggattaaagcaaagagcatactcgggatcagc
tacaacctctatgagaagcttgcaggagttaaagacgaggacaaaaagactaagacggtg
agagaagtaaaaccagacaaagagtcagaggatatcagagagattcttatgggaaggcct
ggattgctggttcttgatgaggcacacacgcctagaaaccagagaagttgtatctggaaa
acactatctaaagtggaaacacaaaaacgtatcttgctttctggaactccttttcagaac
aacttccaggagctgtgcaatgttttgggactcgcaagacctaaatatctggaaaagctc
acagccacactcaagaagagtgggatgactgtaactaaaagaggaaaaaaagctttgggg
aacgaaatcaacaaccgtggtatcgaagaactgaaaactgttatgcttccatttgtgcat
gtccataaaggaagcattcttcaaaggagcctccctggtttgagagaatgcgttgtggtg
ttaaacccaccggagctacagaagagagtcctagaatccattgaagtcactcacaaccgg
aaaaaaataaacgtgtttgaaacagaacacaagctgtctctagtctcagtccatccttct
ctagtatctcgctgcaaactttctgccaaggaaagtttgaccatcgacgaggcattgctt
gcacagcttaagaaggtaagactcgatccaaagcaaagtgtgaaaacgagattcctcatg
gagttcgttgagttatgtgaggtgataaaggagaaagtgttggtcttcagccaatacata
gacccattgaaactgatcatgaaacatctggtctctcgtttcaagtggaatccaggggag
gaagtgttgtacatgcatggcaaactcgagcaaaaacagagacaaaccttgatcaacgaa
ttcaatgacccaaaatccaaggcaaaagtgttcttagcttcaacaaaagcctgctctgaa
gggatcagtctggtaggagcatcaagggtgattcttttggatgttgtgtggaatccagca
gtcgaaagacaagctataagccgtgcttacagaatcgggcagcagcggattgtttacaca
tatcacttggttgcaaaaggaactcctgaggggccaaagtactgtaagcaagcacaaaag
gatagaatctcagagctggtgtttgcatgctcttcgagacctgacaaaggaaaagaaaag
attgctgaagctgtgacagaggataaagtgttggacactatggtgcagcgttcgaagctt
ggggatatgtttgacaatcttataatccaaccaaaggaagcagatttagttgaaggtttc
agcatactcatgccctga
DBGET
integrated database retrieval system
