Capsella rubella (pink shepherd's-purse): 17900631
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Entry
17900631 CDS
T02984
Name
(RefSeq) probable CCR4-associated factor 1 homolog 2
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17900631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17900631
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
17900631
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
17900631
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
17900631
NCBI-ProteinID:
XP_006304066
UniProt:
R0I3X3
LinkDB
All DBs
Position
Unknown
AA seq
289 aa
AA seq
DB search
MSQVPNPKDEDDSIEIREVWNHNLEEEMALIEQAIDDFPFVAMDTEFPGIVCKTVTANPS
PNPKHYEYNYETLKTNVNMLKLIQLGLTLSDERGNLPTCGTNNKQCIWQFNFREFNLKSD
MFAMDSIQLLRDSNIDFEKNNECGVDSARFAELLMGSGVVLNDKIQWVTFHCGYDFGYLL
KLLSGKDLPEEKTDFFEQVTSYFPVVYDIKYLMGFCASLYGGLERVAEILGVKRVGISHQ
AGSDSLLTLRAFNKMKDIFFPGSLDRYSGFLYGLDNPQLLAVAGTKKLK
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaggttccgaatccaaaagatgaagacgattcgattgaaatccgtgaggtctgg
aaccataacctcgaggaagagatggctctgattgaacaagctatcgacgatttccctttc
gtcgccatggatacagagttcccaggaatcgtttgcaagacagtcacggcgaatccaagc
ccaaaccctaaacactacgaatacaactacgagaccttgaagacgaatgtgaatatgctc
aagttgattcagctcggcctcacgttgtcagatgagcggggaaacttgccaacctgtggg
actaacaacaagcaatgcatctggcagttcaatttcagagaattcaatctcaagtccgac
atgttcgccatggattccatccagctcctccgtgactccaacatcgatttcgaaaaaaac
aacgagtgcggcgtcgattcagcacggttcgcggagctgctaatgggttcaggagttgtg
ctcaacgacaagatacagtgggtgacgttccactgcggatacgattttggatacttgctg
aaactcttgtcggggaaagatttgccggaggagaaaacggacttcttcgaacaggtgacg
agctatttcccggtagtgtacgatatcaaatacttgatgggattctgcgcctcgctctat
ggagggctggagagagtagcggagatacttggtgttaaacgagttgggatctctcaccag
gctggatcagatagcttgttaacgttgcgtgccttcaacaagatgaaagacatcttcttc
cctggttccttggacagatattctggttttttgtatgggttagataatcctcagctgctt
gctgttgctggaaccaaaaaattaaaataa
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