Capsella rubella (pink shepherd's-purse): 17900687
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Entry
17900687 CDS
T02984
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-1 isoform X2
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03022
Basal transcription factors
crb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
17900687
09124 Replication and repair
03420 Nucleotide excision repair
17900687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
17900687
03400 DNA repair and recombination proteins [BR:
crb03400
]
17900687
Transcription machinery [BR:
crb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
17900687
DNA repair and recombination proteins [BR:
crb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
17900687
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
AdoHcyase
Motif
Other DBs
NCBI-GeneID:
17900687
NCBI-ProteinID:
XP_006307068
UniProt:
R0GVZ5
LinkDB
All DBs
Position
Unknown
AA seq
593 aa
AA seq
DB search
MAGGQVEKRVKYKSSVKDPGTSGFLRIKEAMLLFVPDDPKSDSKLKVQTQNIKSQKYTKE
GSQKPAWLNLTNKQGRSHIFEFGNYPDMHACRDFITKALAKCEEEPNKPAVPASTEQLSI
RELELRFKLLKENSELQRLHKQFVESKVLTEDEFWATRKKLLGKDSIRKSKQQLGLKSMM
VSGIKPSTDGRTNRVTFNLTPEIIFQIFAEKPAVRQAFISYVPSKMTEKDFWTKYFRAEY
LYSTKNTAVAAAEAAEDEELAVFLKPDEILARETRQKIRRVDPTLDMEADEGDDYTHLMD
HGIQRDGTRDVVEPQNEQFKRSLLQDLNRHAAVVLEGRSIDVDSEDTRIVAEALTRVKQV
SKADGETGKDANQERLERMSRVAGMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVLNAPR
GTKGLKRNVHEAFGLLKESIVEIRARGLSDPLIKPEVSFEVFSSLTRTISTAKNIIGKNP
RESFLDRLPKSTKDEVLHHWTSIQELLRHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLE
AMKESVQSDLRHQISLLVRPMQQALDAAFQHYEADLQRRTAKSSGGERPNGYV
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggctggtgggcaagttgagaagcgagtcaaatacaagagctctgtcaaggatccagga
acttctggatttctcagaattaaagaagcgatgttgctcttcgtccctgatgatcccaaa
tcggattcaaagctcaaagtgcagactcagaacatcaaaagtcaaaaatataccaaagaa
ggatcacagaaacctgcttggctcaatctgacaaacaagcagggaaggagtcatatcttt
gagtttggaaattatcccgatatgcatgcttgccgtgatttcatcaccaaagcacttgct
aaatgtgaagaggagcctaataaaccagctgtcccggcatctactgagcaacttagtatt
agagaattggagctacgcttcaagcttcttaaagaaaatagtgagctgcagagattgcat
aagcaattcgttgaaagtaaagtcttgacagaagatgaattctgggctacaaggaagaaa
ttacttggtaaagattccatccgaaagtcaaaacagcagctcgggcttaagagcatgatg
gtttctggcatcaaaccatctactgatggacggactaatagagtgacgtttaacttgact
ccggagataatttttcagatttttgctgagaagcctgctgttaggcaggcattcatcagt
tatgttccaagtaagatgacagaaaaagacttctggacaaaatattttagagcagaatat
ctttacagcaccaaaaatacagcagtagctgccgcagaagctgctgaggatgaggaactc
gctgtctttctgaagcctgatgagatattggctcgggaaactcgtcaaaagattagacgg
gttgatccaactcttgacatggaggctgatgagggagacgactacactcatcttatggac
cacgggatccagcgtgatggaaccagggatgttgttgaaccacagaatgagcagtttaaa
cgatcacttttgcaagatcttaatcgtcatgctgctgttgtattggaaggcagaagcatt
gatgttgattcagaagatacgaggattgttgcagaggctctcacacgggttaaacaagta
agcaaagctgatggcgaaaccggcaaggacgctaatcaggagagattggagaggatgtcc
cgggtagcaggaatggaggatcttcaagcaccacaaaacttcccgctagccccgctttct
atcaaggatcctcgtgattactttgaatctcaacaaggaaacgttctcaatgcacccaga
ggaacaaagggattgaagagaaatgtccatgaagcttttggattactaaaagaatccatt
gtggagatcagagctagaggattaagtgatccgttaattaagcctgaagtttccttcgag
gttttcagttcgttaacccgaactatctcaactgccaaaaatattattgggaagaaccca
cgagagagctttctagacagactaccaaagtccactaaggatgaagttctacaccattgg
acatcaatacaagaattactgagacatttttggtcatcttatcctataacaaccacatat
cttcataccaaggttggtaaacttaaggatgcaatgtccaatacttattcaaaactcgag
gcaatgaaagagtcggtgcaatctgatctccgccatcagatttctctgctggttcgtcca
atgcaacaggctcttgacgctgcgttccaacactacgaagcagatctgcagagaagaaca
gctaagagcagcggcggcgaaagaccaaacgggtatgtatag
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