Capsella rubella (pink shepherd's-purse): 25194256
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Entry
25194256 CDS
T02984
Symbol
rpoC2, AKK60_gp075
Name
(RefSeq) RNA polymerase beta'' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
25194256 (rpoC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
25194256 (rpoC2)
03400 DNA repair and recombination proteins [BR:
crb03400
]
25194256 (rpoC2)
Enzymes [BR:
crb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
25194256 (rpoC2)
Transcription machinery [BR:
crb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
25194256 (rpoC2)
DNA repair and recombination proteins [BR:
crb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
25194256 (rpoC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Peptidase_M23
Motif
Other DBs
NCBI-GeneID:
25194256
NCBI-ProteinID:
YP_009161911
UniProt:
A0A0U2EYE5
LinkDB
All DBs
Position
CP
AA seq
1379 aa
AA seq
DB search
MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID
DLLTIPSKGWLVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKNRMMSER
IFIQTLIGRVLADDIYIGSRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWIC
RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNG
KIKFNEDLVHPTRTRHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQ
VIAEIREGTYTFHFKERVRKYIYSDSEGEMHWSTDVSHAPEFTYSNVHLLPKTSHLWILS
GGSCGSSLILFSIHKDQDQMNIPFLSAERKSIYSLSVNNDQASQKFFSSDFADKKKLGIS
YYSELNGNLGTSNSNFIYSAIFQENSDLLAKRRRNRFLIPFQSIQEQEKEFIPHSGISVE
IPINGIFRRNSIFAFFDDPRYRRKSSGILKYGAIKADSIIQKEDMIEYRGVQKFKTKYEM
KVDRFFFIPEEVHILPESSAIMVQNYSIIGVDTRLTLNIRSQVGGLIRVERKKKRVELKI
FSGDIHFPDKTDKISRHSGILIPPGRGKTNSKESKKFKNWIYVQRITPTKKKFFVLVRPV
ATYEIADSINLATLFPQDLFREKDNIQLRVFNYILYGNGKPTRGIADTSIQLVRTCLVLN
WDQDNKNSSLEAVRAFFVEVSTKGLIRDFIRIGLVKSHISYIRKRKNSPDSGFISADHMN
PFYPSSPKAGILQQSLRQNRGTIRMFLNRNKESQSLLILSSSNCFRMGPFNHVKYHNVIN
QSKKKNTLITIKNSSGPLGTATQISNFYSFLPLLTYNQISLIKYLQLDNFKYIFQVINSY
LIDENGRILNLDPYSNVVLNPFKLNWYFLHQNYHHNYCEETSTIISLGQFFCENVCIAKK
EPHLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDI
TQGLPKVEQVLEVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRISLV
NKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALE
EAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVI
PAGTGFNKGLVHCSRQHTNILLEKKTKNLALFEGDMRDILFYHREFCESSISKSDFSRI
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacgggccaatctggtatttcacaataaagtgatagatggaactgctattaaa
cgacttattagccgattaatagatcacttcgggatggcatatacatcacacatcctagat
caagtaaagactctgggtttccagcaagccactgctacatccatttcattaggaattgat
gatcttttaacgataccttctaagggctggcttgtccaagatgctgaacaacaaagttgg
attttggaaaaacaccatcattatgggaatgtacatgcggtagaaaaattacgccaatct
attgagatatggtatgctacaagtgaatatttgcgacaagaaatgaatcctaattttagg
atgacggaccccttcaatccagtccatatgatgtctttttcgggagctaggggaaatgca
tctcaagtacatcaattagtaggtatgagaggattaatgtcggatccccaaggacaaatg
attgatttacctattcaaagcaatttacgcgaaggactgtctttaacagaatatattatt
tcttgctatggagcccgtaaaggagttgtagatactgctgtacgcacatcagatgctgga
tatcttacgcgtcgacttgttgaagtagttcaacatattgttgtacgtagaacggattgt
ggcactatccgagggatttctgtgagtcctcgaaataaaaatcggatgatgtcagaaaga
atttttatccaaacattaattggtcgtgtcttagcagacgatatatatataggttcccga
tgtgtcgcctttcgaaatcaagatcttgggattggacttgtcaatcgattaataaccttt
ggaacacaatcaatatctattcgaactccctttacttgtcggagtacatcttggatctgt
cgattatgttatggtcggagtcccactcatggtgacctagttgaattgggggaagctgta
ggtattatcgcgggtcaatcgatcggcgaaccggggactcaactaacattaagaactttt
cataccggcggggtatttacaggaggtactgccgaacatgtacgcgccccttataatgga
aaaatcaaattcaatgaggatttggttcatcctacacgtacacggcacgggcatcctgcc
tttctatgttatatagacttgtctgtaattattgagagcgaagatattatacatagcgtg
acgattccaccaaaaagttttcttttagttcaaaatgatcaatatgtggaatcagaacaa
gttattgctgagattcgcgagggaacatacacttttcattttaaagagagggttagaaaa
tatatttattctgactcagagggcgaaatgcactggagtactgatgtgtcccatgcaccc
gaatttacatatagtaatgtccacctcttaccaaaaacaagtcatttatggatattatca
ggaggttcatgtggatctagtctaattcttttttcgatccataaagatcaagatcaaatg
aacataccctttctttccgccgaaagaaaatctatttatagcctctcagtgaataatgat
caagcgagccaaaaattttttagttcggattttgctgataaaaaaaaattagggatttcc
tattattcagaattgaatggaaacttaggtactagtaattctaatttcatctattctgct
atttttcaggagaactcagatttattagcaaaaaggcgaagaaatcgatttctcattcca
ttccaatcgattcaagagcaagagaaagaattcataccgcattcaggtatctcggttgaa
atacccataaatggtattttccgtagaaatagtatttttgctttttttgatgatcctaga
taccgaagaaagagttccggaattcttaaatatggggctataaaggcggattcaatcatc
caaaaagaggatatgattgagtatcgaggagtccaaaaatttaagacaaaatacgaaatg
aaagtagatcgcttttttttcattcctgaggaagtgcatattttacccgaatcctctgcc
ataatggtacagaactatagtatcattggagtcgatacacgactcactttaaatataaga
agccaagtcggcgggttgatccgagtggagagaaaaaaaaaaagggttgaactcaaaata
ttttcgggggatatccattttccggacaagacagataaaatatcccgacacagtggcatc
ttgataccgccaggaagaggaaaaacaaactcgaaggaatcaaaaaaatttaaaaattgg
atttatgtccaacggatcacaccaaccaagaaaaagttttttgttttggtgcggcccgta
gccacctatgagatagcggacagtataaatttggcaacactcttcccacaagatctcttt
cgggaaaaggataatattcaacttcgagttttcaactatattctttatggaaatggcaaa
ccaactcgaggaattgctgacacaagtattcaattagttcgaacttgtttagtcttgaat
tgggaccaagacaacaaaaattcttccctcgaggcggtccgtgctttctttgttgaagta
agtacaaagggtttgattcgagatttcataagaattggcttagtgaaatcccatatttca
tatataagaaaaaggaaaaattcgccagattcgggatttatctctgcagatcacatgaat
ccgttttatccgagttctcccaaggctggcattcttcaacaatcacttagacaaaatcgc
ggaactattcgtatgttcttaaatcgaaataaggaatcccaatctttgttaattttatca
tcatctaattgttttagaatgggtccttttaatcatgtaaaatatcacaatgtgataaac
caatcaaaaaaaaaaaatactctaattacaattaaaaattcgtcgggccccttaggaaca
gccacccaaatttccaatttttattcgtttttgcctttactaacgtataatcagatctct
ttaattaaatatttgcaacttgataacttcaaatatatttttcaagtaattaactcttat
ttaatcgatgaaaacggaagaattttgaatctcgacccatacagtaacgttgttttgaat
ccattcaaattgaattggtattttcttcatcaaaattatcatcataattattgtgaggaa
acgtccacaataattagtcttggacaatttttttgtgaaaatgtatgtatagccaaaaaa
gaaccgcacctaaaatcgggtcaagttttaattgttcaaagggattctgtagtaataaga
tccgctaagccctatttggctactccgggagcaaaagttcatgggcattacagagaaatt
ctttatgaaggggatacattagttacatttatatatgaaaaatcgagatccggtgatata
acacaaggtcttccaaaagtagaacaagtgttagaagtccgctcgattgattcaatatcg
ctgaacttagaaaagcggattaagggttggaacaagtgtataacaagaattcttggaatt
ccttggggatttttgattggtgctgagctaactatagtgcaaagtcgtatttctttggtt
aataagattcaaaaggtttatcgatcccaaggggtgcagattcataataggcatatcgaa
attattgtacgtcaaataacatcaaaagttttggtttccgaagagggaatgtctaatgtt
tttttacctggagaacttattggattgttacgagcagaacgaacggggcgtgctttagaa
gaagcaatctgttatagagccgttttattaggaataactcgagcatctttgaatactcaa
agttttatatccgaagcaagttttcaagaaactgctcgagttttagcaaaagctgctctt
cggggtcgtatcgattggttgaaaggcctgaaagaaaatgttgttctagggggggttatc
cccgccgggaccgggttcaacaaaggattggtgcattgttcacggcaacataccaacatt
cttttggaaaaaaaaacaaagaatttagctttattcgagggagatatgagagatatttta
ttctaccacagggaattttgtgaatcttctatttccaaatctgacttttctaggatttaa
DBGET
integrated database retrieval system
