Capsella rubella (pink shepherd's-purse): 25194257
Help
Entry
25194257 CDS
T02984
Symbol
rpoC1, AKK60_gp074
Name
(RefSeq) RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
25194257 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
25194257 (rpoC1)
03400 DNA repair and recombination proteins [BR:
crb03400
]
25194257 (rpoC1)
Enzymes [BR:
crb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
25194257 (rpoC1)
Transcription machinery [BR:
crb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
25194257 (rpoC1)
DNA repair and recombination proteins [BR:
crb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
25194257 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-GeneID:
25194257
NCBI-ProteinID:
YP_009161912
UniProt:
A0A0U5J8N8
LinkDB
All DBs
Position
CP
AA seq
680 aa
AA seq
DB search
MIDRYKHQQLRIGLVSPQQISAWATKIIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
FGPIKSGICACGNYRVMGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLK
RLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFT
TQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNEWEDRKIVRR
KDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRRVI
YRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVI
EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLA
SNIGVAKSQIREKKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHP
LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY
VLTSGTRRGICANRYNPCNRKNYQNERIYETNYKYTKEPFFCNSYDAIGAYRQKRIDLDS
PLWLRWQLDQRVIASREVPIEVHYESFGNYHEIYAHYLIVRSVKKETFCIYIRTTVGHIS
FYREIEEAIQGFSQACSYDT
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatcggtataaacatcaacaactccgaattggattagtttctcctcagcaaata
agtgcttgggccactaaaataatacctaatggagagatagttggagaggtgacaaaaccc
tatacttttcattacaaaaccaataaaccggaaaaagatggattattttgtgaaaggatt
tttgggcctataaagagcggaatttgcgcttgtggaaattatcgagtgatgggagatgaa
aaagaagacccaaagttttgtgaacaatgtggagttgaatttgttgattctcggatacga
agatatcaaatgggatacataaaactgacatgtcctgtaactcatgtatggtatttgaaa
cgtcttcctagttatattgcgaatcttttagataaacctcttaaagaattagaaggccta
gtatactgcgatttttcttttgctaggcccataactaaaaaacctactttcttacgatta
cgaggttcatttgaatatgaaattcaatcctggaaatacagcatcccacttttttttact
actcaaggttttgatatatttcgaaatcgagaaatttctactggggcgggtgctatccga
gaacaattagccgatttagatttgcgaattattatagaaaattcgttggtagaatggaaa
caattaggagaagaagggcctacggggaatgaatgggaagatcgaaaaattgtaagaaga
aaagattttttagttagacgtatggaattagctaagcattttattcgaacaaatatagaa
ccggaatggatggttttatgtctcttaccggttcttcctcccgagttgagacccatcatt
cagatagaagggggtaaactaatgagttcagatattaatgaactctatagaagagtgatc
tatcggaacaatactcttaccgatctattaacaacaagtagatctacaccaggggaatta
gtaatgtgtcaggaaaaattggtacaagaagccgtggatacacttcttgataatggaatc
cgtggacaacccatgagggatggtcataataaggtttacaagtcattttcagatgtaatt
gaaggcaaagagggaagatttcgcgagactctgcttgggaaacgggtcgattattcgggg
cgctcggtgattgtcgttggaccttcactttcattacatcgctgtggattgcctcgcgaa
atagcaatagagctcttccagacatttgtaattcgtggtttaattagacaacatctggct
tcgaacataggagttgctaagagtcaaattcgtgaaaaaaagccgattgtctgggaaatc
cttcaagaagtcatgcaggggcatcctgtattactgaatagagcacctaccttacataga
ttaggcatacagtcattccaaccaattttagtagaaggacgcactatttgtttacatcca
ttagtttgtaagggattcaatgcagactttgatggggatcaaatggctgttcatgtccct
ttatctttagaggctcaagcagaggctcgtttacttatgttttctcatatgaatctctta
tctccagctattggagatcccatttctgtaccgactcaagatatgcttattggactctat
gtattaacgagcggcactcgtcgaggtatttgtgcaaacagatataatccatgtaatcga
aaaaactatcaaaatgaaagaatttacgaaacaaactataagtatacgaaagaacccttt
ttttgcaattcctatgatgcaattggagcttatcgacagaaaagaatcgatttagatagt
ccgttgtggcttcggtggcaattagatcaacgcgttattgcttcaagagaagttcctatc
gaagttcactatgaatcttttggtaactatcatgagatttatgcacactatctaatagta
agaagtgtaaaaaaagaaactttttgtatatatattcgaaccacagttggtcatatttct
ttttatcgagaaatcgaggaagctatacaaggtttttctcaagcctgttcatatgatacc
taa
DBGET
integrated database retrieval system
