Capsella rubella (pink shepherd's-purse): 25194258
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Entry
25194258 CDS
T02984
Symbol
rpoB, AKK60_gp073
Name
(RefSeq) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
25194258 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crb03021
]
25194258 (rpoB)
03400 DNA repair and recombination proteins [BR:
crb03400
]
25194258 (rpoB)
Enzymes [BR:
crb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
25194258 (rpoB)
Transcription machinery [BR:
crb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
25194258 (rpoB)
DNA repair and recombination proteins [BR:
crb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
25194258 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-GeneID:
25194258
NCBI-ProteinID:
YP_009161913
UniProt:
A0A0U5J7T1
LinkDB
All DBs
Position
CP
AA seq
1072 aa
AA seq
DB search
MLGDEKEGTSTIPGLNQIQFEGFYRFIDQGLIEELSKFPKIEDIDHEIEFQLFVETYQLV
EPLIKERDAVYESLTYSSELYVSAGLIWKTSRNMQEQRIFIGNIPLMNSLGTFIVNGIYR
IVINQILQSPGIYYQSELDHNGISVYTGTIISDWGGRLELEIDKKARIWARVSRKQKISI
LVLSSAMGLNLREILENVCYPEIFLSFLTDKEKKKIGSKENAILEFYQQFSCVGGDPIFS
ESLCKELQKKFFHQRCELGRIGRRNINWRLNLNIPQNNIFLLPRDILAAADHLIGMKFGM
GTLDDMNHLKNKRIRSVADLLQDQLGLALARLENVVKGTISGAIRHKLIPTPQNLVTSTP
LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTANFRIRDIHPSHYGR
ICPIDTSEGINVGLIGSLSIHARIGDWGSLESPFYELFEKSKKARIRMLFLSPSQDEYYM
IAAGNSLALNRGIQEEQAVPARYRQEFLTIAWEEVHLRSIFPFQYFSIGASLIPFIEHND
ANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEHEGKILYTDTEKIVFS
GNGDTLSIPLIMYQRSNKNTCMHQKPQVRRGKCIKKGQILADGAATVGGELALGKNILVA
YMPWEGYNFEDAVLISECLVYGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLR
NLDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLP
IGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQD
MPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRK
LVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKI
HGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQE
VLGTTIIGGTIPKPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEV
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgcttggggatgaaaaagagggaacatctacaatacccggattgaatcagatacaattt
gaagggttttatcggtttattgatcagggtttaatagaagaactttctaagtttccaaaa
attgaagatatagatcacgaaattgaatttcaattatttgtggaaacttatcaattggta
gaacctctgataaaagaacgagatgctgtctatgaatcacttacatattcttctgaatta
tatgtatccgcgggattaatttggaaaaccagtaggaatatgcaagaacaacgaattttt
attggaaacattcctttaatgaattcccttggaacttttatagtaaacggaatatacaga
attgtgatcaaccaaatattgcaaagtcccggtatctattaccagtcagaattggatcat
aacgggatttcggtctataccggcaccataatatcagattggggaggcaggttagaatta
gagattgataaaaaagcaagaatatgggctcgggtgagtaggaaacaaaaaatatctatt
ctagttctatcatcagctatgggtttgaatctacgagaaattctagagaatgtttgctac
cctgaaattttcttatctttcttgaccgataaggagaaaaaaaaaattgggtcaaaagaa
aatgctattttggagttttatcaacaattttcttgtgtaggtggggatccaatattttct
gaatccttatgtaaggaattacaaaaaaaattctttcaccaaaggtgtgaattaggaagg
attggtcgccgaaatattaattggagactgaatcttaatatacctcagaacaatatattt
ttattaccacgagatatattagcagctgccgatcatttgattgggatgaaatttggaatg
ggtacacttgatgatatgaatcatttgaaaaataaacgtattcgctctgtagcggatctt
ttacaagaccagctcgggttggctctggctcgtttagaaaatgtagttaagggaactatc
tccggagcaattaggcataaattgatacctactcctcagaatttggtaacttcaactccg
ttaacaactacttatgaatcctttttcggattacacccattatctcaagttttggatcga
actaatccattgacacaaatcgttcatgggagaaaattgagttatttgggcccgggcgga
ttaacggggcgaactgcaaattttcggatacgagatatccatcctagtcactatgggcgt
atttgtcccattgacacgtctgaaggaattaatgttggacttattggatctttatcaatt
catgccaggattggtgattgggggtcattagaaagtccattttatgaactctttgagaaa
tcaaaaaaagcacggatacggatgctttttttatcaccaagtcaagatgaatattatatg
atagcggcaggaaattctttggctcttaatcggggtattcaagaagaacaggctgttcca
gctcgctaccgccaagaatttttgactattgcatgggaagaggttcatcttcgaagcatt
ttccctttccaatatttttccattggagcttctctaattccttttatcgaacataatgat
gcgaatcgagctttaatgagttctaatatgcaacgtcaagcagttccactttctcggtcc
gaaaagtgcattgttggaactgggttggaacgccaagtggctttagattcaggggttccc
gctatagccgaacacgagggaaaaatcctttatactgacactgagaagatcgttttttcg
ggcaatggggatactttaagcattccattaattatgtatcaacgctcaaacaaaaatact
tgtatgcatcaaaaacctcaggttcggcggggtaaatgcattaaaaagggacaaatttta
gcggatggtgctgctacagttggtggggaactcgctttggggaaaaatatattagtggct
tatatgccatgggaaggatacaattttgaagatgcggtactcattagtgagtgtctagta
tatggtgatatttatacttctttccacatacggaaatatgaaattcagacgcatgtgaca
acccaaggtcctgaaaggataactaaagaaataccgcatctagaaggccggttactccga
aatttagacaaaaatggaattgtgatgctaggatcgtgggttgaaacaggtgatatttta
gtaggtaaattaacgcctcaagtggcgaaagaatcctcctatgctccggaagataggtta
ttacgagccatacttggcattcaggtatcgacttcaaaagaaacttgtttaaaattgcct
ataggtggtagaggtcgagttattgatgtgaggtgggttcagaaaaaggggggttcaagt
tataacccagaaataattcgtgtatatatttcacagaaacgtgaaatcaaagtaggtgat
aaagtagctggaagacatggaaataaaggtatcatttccaaaattttgcctagacaggat
atgccttatttgcaagacgggagacccgtggatatggtcttcaacccattaggagtaccc
tcacgcatgaatgtaggacagatatttgaatgttcgcttgggttagcgggaagtctgcta
gatagacattatcgaatagccccttttgatgagagatatgaacaagaggcttctagaaaa
ctggtgttttccgaattatatgaagccagtaagcaaacagcgaatccatgggtatttgaa
cccgagtatccaggaaaaagccgcatttttgatggaagaacaggagatccttttgaacag
cctgtgataataggaaagccctatatcttgaaattaattcatcaggttgatgataaaata
cacggacgttctagtggacattatgcacttgttacacaacaaccccttagaggccgttcc
aagcagggggggcagcgggtaggcgaaatggaggtttgggctctagaggggtttggtgtt
gctcatattttacaagagatgcttacttataaatctgatcatattagagctcgccaagaa
gtacttggtaccactatcattggaggaacaatacctaaaccagaagatgctccagaatct
tttcgattacttgttcgagaactacgatctttggctctggaactgaatcatttccttgta
tctgagaagaatttccagattaataggaaggaagtttaa
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integrated database retrieval system
