Chlamydomonas reinhardtii: CHLRE_01g039300v5
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Entry
CHLRE_01g039300v5 CDS
T01039
Name
(RefSeq) uncharacterized protein
KO
K13126
polyadenylate-binding protein
Organism
cre
Chlamydomonas reinhardtii
Pathway
cre03015
mRNA surveillance pathway
cre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CHLRE_01g039300v5
09123 Folding, sorting and degradation
03018 RNA degradation
CHLRE_01g039300v5
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cre03019
]
CHLRE_01g039300v5
03041 Spliceosome [BR:
cre03041
]
CHLRE_01g039300v5
Messenger RNA biogenesis [BR:
cre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
CHLRE_01g039300v5
mRNA cycle factors
Stress granule specific factors
CHLRE_01g039300v5
Spliceosome [BR:
cre03041
]
Complex C
Other components
Complex C specific factors
CHLRE_01g039300v5
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RRM_7
RRM_10
RRM_RdRP1_2
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
5715532
NCBI-ProteinID:
XP_042928681
UniProt:
A0A2K3E7A5
LinkDB
All DBs
Position
1:5537325..5542775
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AA seq
657 aa
AA seq
DB search
MATTESSAPAATTQPASTPLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVT
RRSLGYAYVNYNSALDPQAADRAMETLNYHVVNGKPMRIMWSHRDPSARKSGVGNIFIKN
LDKTIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIE
GKIVYVGPFQKRADRPQGKDVYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKG
GSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERY
LKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMKDGSGKSKGFGFVCFTSHDEAT
RAVTEMNGKMVKGKPLYVALAQRKDVRRAQLEANMQARMGMGAMSRPPNPMAGMSPYPGA
MPFFAPGPGGMAAGPRAPGMMYPPMMPPRGMPGPGRGPRGPMMPPQMMGGPMMGPPMGPG
RGRGGRGRGPMMPMQPYPGPGPMDFQGGFQGRGRGRGPAPGGRGPSGRGQGRGNNAPAQQ
PKPAAEPAAAPAAAAPAAAAPAAAAEPEAPAAQQPLTASALAAAAPEQQKMMIGERLYPQ
VAELQPDLAGKITGMLLEMDNAELLMLLESHEALVSKVDEAIAVLKQHNVIAEENKA
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggcgactactgagtcctcggccccggcggccaccacccagccggccagcaccccgctg
gcgaactcgtcgctgtacgtcggtgacctggagaaggatgtcaccgaggcccagctgttc
gagctcttctcctcggttggccctgtggcctccattcgcgtgtgccgcgatgccgtcacg
cgccgctcgctgggctacgcctacgtcaactacaacagcgctctggacccccaggctgct
gaccgcgccatggagaccctgaactaccatgtcgtgaacggcaagcctatgcgcatcatg
tggtcgcaccgcgacccttcggcccgcaagtcgggcgtcggcaacatcttcatcaagaac
ctggacaagaccatcgacgccaaggccctgcacgacaccttctcggccttcggcaagatt
ctgtcctgcaaggttgccactgacgccaacggcgtgtcgaagggctacggcttcgtgcac
ttcgaggaccaggccgctgccgatcgcgccattcagaccgtcaaccagaaggagattgag
ggcaagatcgtgtacgtgggccccttccagaagcgcgctgaccgcccccagggcaaggac
gtgtacaccaacgtgttcgtcaagaacctgccggccgacatcggcgacgacgagctgggc
aagatggccaccgagcacggcgagatcaccagcgcggtggtcatgaaggacgacaagggc
ggcagcaagggcttcggcttcatcaacttcaaggacgccgagtcggcggccaagtgcgtg
gagtacctgaacgagcgcgagatgagcggcaagaccctgtacgccggccgcgcccagaag
aagaccgagcgcgaggcgatgctgcgccagaaggccgaggagagcaagcaggagcgttac
ctgaagtaccagggcatgaacctgtacgtcaagaacctgtccgacgaggtcgacgacgac
gccctgcgtgagctgttcgccaactctggcaccatcacctcgtgcaaggtcatgaaggac
ggcagcggcaagtccaagggcttcggcttcgtgtgcttcaccagccacgacgaggccacc
cgcgccgtgaccgagatgaacggcaagatggtcaagggcaagcccctgtacgtggccctg
gcgcagcgcaaggacgtgcgccgcgcccagctggaggccaacatgcaggcgcgcatgggc
atgggcgccatgagccgcccgccgaacccgatggccggcatgagcccctaccccggcgcc
atgccgttcttcgctcccggccccggcggcatggctgctggcccgcgcgctccgggcatg
atgtacccgcccatgatgccgccgcgcggcatgcctggccccggccgcggcccccgcggc
cccatgatgccgccccagatgatgggtggccccatgatgggcccgcccatgggccccggg
cgcggccgtggcggccgcggccgcggccccatgatgcccatgcagccgtaccccggcccc
ggccccatggacttccagggcggcttccagggccgcggccgtggccgcggccccgccccc
ggcggccgcggcccctccggccgcggccagggccgcggcaacaacgcccctgcccagcag
cccaagcccgccgctgagccggccgccgcgcccgccgccgccgcccccgctgccgcggcg
cctgccgccgcggcggagccggaggcccccgccgcccagcagccgctgaccgcctccgcg
ctggccgccgccgcgccggagcagcagaagatgatgatcggcgagcgcctgtacccgcag
gtggcggagctgcagcccgacctggctggcaagatcaccggcatgctgctggagatggac
aacgccgagcttctgatgcttctggagtcgcacgaggcgctggtgtccaaggtggacgag
gccatcgctgtgctcaagcagcacaacgtgattgccgaggagaacaaggcttaa
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