Chlamydomonas reinhardtii: CHLRE_02g117900v5
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Entry
CHLRE_02g117900v5 CDS
T01039
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cre
Chlamydomonas reinhardtii
Pathway
cre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHLRE_02g117900v5
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cre03019
]
CHLRE_02g117900v5
03041 Spliceosome [BR:
cre03041
]
CHLRE_02g117900v5
03009 Ribosome biogenesis [BR:
cre03009
]
CHLRE_02g117900v5
03016 Transfer RNA biogenesis [BR:
cre03016
]
CHLRE_02g117900v5
Enzymes [BR:
cre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CHLRE_02g117900v5
Messenger RNA biogenesis [BR:
cre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CHLRE_02g117900v5
Spliceosome [BR:
cre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CHLRE_02g117900v5
Complex C
U4/U6.U5 tri-SnRNP related factors
CHLRE_02g117900v5
Ribosome biogenesis [BR:
cre03009
]
Eukaryotic type
Pre-60S particles
Helicases
CHLRE_02g117900v5
Transfer RNA biogenesis [BR:
cre03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CHLRE_02g117900v5
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
5727993
NCBI-ProteinID:
XP_042927640
UniProt:
A0A2K3E3F4
LinkDB
All DBs
Position
2:complement(6694347..6703559)
Genome browser
AA seq
1130 aa
AA seq
DB search
MSSGGAAVGAAGKRPAEPTDADGLSAGAAPDAAVAPAAKAPRLTEQRVAALPVGANLVEV
DGKSCTHEVAWPPGQQGSLLPPPARAGPPARVYPFKIDPFQQVAVNCLEAGHSVMVAAHT
SAGKTVVAEYAFAMALRDKTRVVYTSPLKALSNQKYRELAEEFVDVGLMTGDVTINPNAS
CLVMTTEILRSMLYRGSEVVREVQLVVYDEIHYLRDKERGVVWEESIILAPKQARFVFLS
ATIPNAREFAEWVSKTHNSPCHVVYTDYRPTPLQHYVFPAGGDGLYMVVDERGVFRDDNF
NKAVAVLTETDPSGKGSGKGAKGGGGGAGGGGGGGGANGVAPAGSVESGKSDIFKLVRMI
MERNYDPVIVFSFSKRECEALASQMAPLELNSEDEKALVGNIYWSAMECLSQDDQRLPQI
VSMLPMLQRGIGVHHSGLLPIVKEVVEILFQEGLLKCLFATETFSTGLNMPAKTVVFTNV
KKYDGGAFRWITSGEYIQMSGRAGRRGLDDRGVVILMLDQRLEPPVAKEMIKGAPDTLYS
AFHLGYNMLLGLMRVEGAEPEQLMAASFRQFQTERSLPALEARVAALEAARDAIVIEDEA
GVRQYFALLDQLAGLRAALRQLLNDPKVALPFLQPGRLVRLLPEPPEMARPLPEFSEPPA
PGAAPAPPPPADPPASTSGKGPAAAPVPEGGGGEAVVSEVTHGVWGAVVNFERVGGKKEG
GDGDDKKGKKGVGGTFIVDVLVNTAQPPGGAGGAGASTSGALPRGTPVRLLPPGDKSGVP
MVVTFSINQIDRLSSVRIYLQKDLRPLDARKAGVSGLAEALVRLAAAGGKAGGGRVPLLD
PEDDMKIKDKTARKTQSKMESVEALLAKHPLATSLGAAELRARLGALQRRGAAEEAVAAA
RREAKAATSLILKDELKARQRVLRRLAYVDGEGVVSVKGRLAASLTAGGDELVLAELVFG
GAFNGMGLEALAAACSCFVFQEKGGAGGGPKLREELVGALAAVKDAARRVAKVELECKMA
LDCGPHGGSVSAAAGSSTGPDPLDEYLSKFRPDLMEPVAAWVRGAKFAELAKMTSVFEGS
LVRAIRRLEELLRQLGEGLRGIGEVALAERFEAARERIKRDIIFAASLYL
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcaggaggcgcagcggtgggtgccgctggcaagcgccccgccgagcccaccgac
gctgacggcttgagcgcgggagctgcacccgacgctgccgtcgcacccgccgcgaaggcg
ccgcgccttaccgagcagcgcgtagctgcgctgccagtgggtgccaacctggtggaggtg
gatggcaagtcgtgcacgcacgaggtggcatggccgccggggcagcagggcagcctgctg
cctccgccggcgcgggcagggccgccagcgcgcgtgtaccccttcaagatcgaccccttc
cagcaggtggcggtcaactgcctggaggcgggccacagcgtgatggtggccgcccacacc
tctgccggcaaaacggtggtggcggagtacgcgtttgcaatggcgctgcgcgacaagacg
cgtgtggtgtacaccagcccgctcaaggcgctgagcaaccagaagtaccgcgagctggcg
gaggagtttgtggacgtggggctgatgacgggcgacgtgaccataaaccccaatgcctcc
tgcctggtaatgaccacggagattctgcgttccatgctgtaccgggggtcagaggtggtg
cgcgaggtgcagctggtggtgtatgatgagattcactacctgagggacaaggagcgcggc
gtggtgtgggaggagtccatcatcctggcgcccaagcaggcccggttcgtgttcctgtcc
gccaccatccccaacgcgcgcgagttcgcggagtgggtgtccaagacgcacaactcgccc
tgccacgtggtgtacactgactaccgccccacgccgctgcagcactacgtcttcccggca
ggcggtgacggtttgtacatggtggtggacgagcgcggcgtgttccgggatgacaacttc
aacaaggcggtggccgtgctgacggagacggaccccagcgggaaaggcagtggcaagggc
gccaaaggtggcggcggtggggcaggcggcggcggcggtggcggcggcgctaatggcgta
gcgcccgccggcagcgtggagagcggcaagagcgacatctttaagctggtccgcatgatc
atggagcggaactacgaccccgtcattgtgttctccttctccaagcgcgagtgcgaggcg
ctggcgtcgcagatggcccccctggagctcaacagcgaggacgagaaggcgctggtgggc
aacatctactggagcgccatggagtgcctcagccaggacgaccagcgtctgccgcagatc
gtgtccatgctgcccatgctgcagcgcggcatcggcgtgcaccactcgggcctgctgccc
atcgtcaaggaggtggtggagatcctgttccaggagggcctgctcaagtgcctgttcgcg
acggagaccttctccaccggcctcaatatgcctgccaagacggtggtcttcaccaacgta
aagaaatacgacggcggcgccttcaggtggatcacgtccggcgagtacattcagatgagc
ggccgcgccgggcgccgtggcctggacgaccgcggtgtggtgatcctgatgctagaccag
cgcctggagccgccggtggccaaggagatgatcaagggcgcgccagacacgctgtacagc
gccttccacctgggctacaacatgctgctggggctgatgcgggtggagggcgccgagccg
gagcagctcatggcggcgtcattcaggcagttccagacggagcgcagcttgccggccctg
gaggcgcgtgtggcggcgctggaggcggcacgggatgccatcgtaatcgaggacgaggcg
ggtgtgcggcagtactttgcgctgctggaccagctggcggggctgcgggcggcgctgcgg
cagctgctgaacgaccccaaggtggcgctgcccttcctgcagccagggcgcctcgtgcgg
ctgctgccggaacctccggagatggctcggccacttccggagttctccgaaccacccgcg
cctggcgccgcgccggcgccgccgccacctgcggacccccccgcatccaccagcggcaag
gggcccgcggctgcgcccgtgcctgagggcggtggtggcgaggcggtggtgtcggaggtg
acccacggcgtgtggggggcggtggtgaacttcgagcgagtgggcggcaagaaggaggga
ggagacggggacgacaaaaagggcaagaagggcgtcggcggcacctttatagtggatgtg
ctggtcaacactgcacagccgccgggcggggcgggcggcgccggcgccagcaccagcggc
gccctgccgcgcggcacgcccgtgcggctgctgcctcccggcgacaagtccggtgtgccc
atggtggtcacgttctccataaatcagatcgaccggctatcgagtgtgcgcatctaccta
cagaaggacctgcggccgctagacgcgcgcaaagcgggcgtgtccggactggcggaggcg
ctggtgcggctggcggcggctggcggcaaggccggcggcggccgcgtgccgctgctggac
cctgaggatgacatgaagataaaggacaagacggcgcgcaagacgcagtccaagatggag
agcgtggaggcgctgctggccaagcatccgctggccaccagcctgggagcggcggagctg
cgggcgcggctgggggcgctgcagcggcgcggcgcggcggaggaggcggtggcggcggcg
cggcgggaagccaaggccgctaccagcctcatcctcaaagacgagctcaaggcgcggcaa
cgtgtgctgcggcggctggcgtacgtggacggcgagggtgtggtgtcggtgaaggggcgg
ctggcggcgtcgctgacggcgggcggtgacgagctggtgcttgcggagctggtgttcggc
ggcgccttcaacggcatgggcctggaggcgctggcggccgcatgcagctgcttcgtgttc
caggagaagggcggcgcgggcggcgggcccaagctgcgtgaggagctggtgggcgcgctg
gcggcggtgaaggacgcggcgcggcgggtggccaaggtggagctggagtgcaagatggcg
ctggactgcggcccgcacggcggctccgtctctgccgccgccggctcctccaccgggccc
gacccgctggacgagtatttgtccaagttccggcccgacctgatggagccggtggcggcc
tgggtgcgcggcgccaagttcgcggagctggccaagatgaccagcgtgttcgagggctcg
ctggtccgagccattcggcggctggaggagctgctgcggcagctgggcgagggcttgaga
ggcattggcgaggtggcgctggcagagcggtttgaggcggcgcgcgagcgcatcaagcgt
gacatcatcttcgccgcctccctgtacctatga
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