KEGG   Chlamydomonas reinhardtii: CHLRE_02g142850v5
Entry
CHLRE_02g142850v5 CDS       T01039                                 
Name
(RefSeq) uncharacterized protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
cre  Chlamydomonas reinhardtii
Pathway
cre03018  RNA degradation
cre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CHLRE_02g142850v5
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CHLRE_02g142850v5
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cre03019]
    CHLRE_02g142850v5
   03041 Spliceosome [BR:cre03041]
    CHLRE_02g142850v5
Messenger RNA biogenesis [BR:cre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CHLRE_02g142850v5
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CHLRE_02g142850v5
Spliceosome [BR:cre03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CHLRE_02g142850v5
SSDB
Motif
Pfam: LSM SM-ATX LSM14
Other DBs
NCBI-GeneID: 5720453
NCBI-ProteinID: XP_001694854
UniProt: A8J0Q9
LinkDB
Position
2:complement(7710153..7712792)
AA seq 100 aa
MSGNDTKLTDLVGSQVTVITNDGKHYVGVLRGYDQTWNLLLQECQERVYSAKSGVQVIQN
PGIYCIRGDNVAIVGEVDEEADGAVDLSAIRAAPLVPIRH
NT seq 303 nt   +upstreamnt  +downstreamnt
atgtcaggcaacgacacaaaacttacagacctggttggatctcaagtcaccgtcatcacg
aatgacggcaagcactacgtgggagtgctgcgcgggtacgaccagacctggaacctgctg
ttgcaagagtgccaagaacgggtgtattccgcaaagtctggtgtacaagtcatccagaac
cccgggatatactgcatccgaggagacaacgtcgcgatagtgggcgaggtggatgaggag
gcggacggcgcagtggacctctcagccatccgggcggcgccgctggtgcccatccgccac
tga

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