Chlamydomonas reinhardtii: CHLRE_02g142850v5
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Entry
CHLRE_02g142850v5 CDS
T01039
Name
(RefSeq) uncharacterized protein
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
cre
Chlamydomonas reinhardtii
Pathway
cre03018
RNA degradation
cre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CHLRE_02g142850v5
09123 Folding, sorting and degradation
03018 RNA degradation
CHLRE_02g142850v5
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cre03019
]
CHLRE_02g142850v5
03041 Spliceosome [BR:
cre03041
]
CHLRE_02g142850v5
Messenger RNA biogenesis [BR:
cre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CHLRE_02g142850v5
mRNA degradation factors
5'-3' decay
Lsm complex
CHLRE_02g142850v5
Spliceosome [BR:
cre03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CHLRE_02g142850v5
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Motif
Other DBs
NCBI-GeneID:
5720453
NCBI-ProteinID:
XP_001694854
UniProt:
A8J0Q9
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All DBs
Position
2:complement(7710153..7712792)
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AA seq
100 aa
AA seq
DB search
MSGNDTKLTDLVGSQVTVITNDGKHYVGVLRGYDQTWNLLLQECQERVYSAKSGVQVIQN
PGIYCIRGDNVAIVGEVDEEADGAVDLSAIRAAPLVPIRH
NT seq
303 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcaacgacacaaaacttacagacctggttggatctcaagtcaccgtcatcacg
aatgacggcaagcactacgtgggagtgctgcgcgggtacgaccagacctggaacctgctg
ttgcaagagtgccaagaacgggtgtattccgcaaagtctggtgtacaagtcatccagaac
cccgggatatactgcatccgaggagacaacgtcgcgatagtgggcgaggtggatgaggag
gcggacggcgcagtggacctctcagccatccgggcggcgccgctggtgcccatccgccac
tga
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