Chlamydomonas reinhardtii: CHLRE_03g164101v5
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Entry
CHLRE_03g164101v5 CDS
T01039
Name
(RefSeq) uncharacterized protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
cre
Chlamydomonas reinhardtii
Pathway
cre03018
RNA degradation
cre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CHLRE_03g164101v5
09123 Folding, sorting and degradation
03018 RNA degradation
CHLRE_03g164101v5
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cre03019
]
CHLRE_03g164101v5
03041 Spliceosome [BR:
cre03041
]
CHLRE_03g164101v5
Messenger RNA biogenesis [BR:
cre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CHLRE_03g164101v5
mRNA degradation factors
5'-3' decay
Lsm complex
CHLRE_03g164101v5
Spliceosome [BR:
cre03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CHLRE_03g164101v5
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
5729059
NCBI-ProteinID:
XP_042925886
UniProt:
A8IFM6
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All DBs
Position
3:complement(3034460..3036555)
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AA seq
109 aa
AA seq
DB search
MAGKAKESAVDLAKFIDKGVRVKLAGGREVQGILKGYDQLLNLVIDEAVEYLRDPEDPLT
VTDETRSLGLLVCRGTAVMLVAPSAGMEEIANPFLQAKDGEQAAEGDDE
NT seq
330 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaaaggccaaggagtcggcggtcgacctcgccaagtttattgacaagggcgtt
cgcgtcaagcttgctggtggacgggaagtgcaagggatcttgaagggctacgaccagctg
ctgaacctggtgatcgatgaggctgtggagtacctccgagacccggaagacccgctcacg
gtgaccgatgagacccggtcactagggctgctggtgtgccgcggcactgcagtgatgctg
gttgcgccgtccgcgggcatggaggagattgccaaccccttcctccaggcgaaagacggc
gagcaggcggcagagggcgacgatgaatag
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