KEGG   Chlamydomonas reinhardtii: CHLRE_03g199647v5
Entry
CHLRE_03g199647v5 CDS       T01039                                 
Name
(RefSeq) uncharacterized protein
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
cre  Chlamydomonas reinhardtii
Pathway
cre03013  Nucleocytoplasmic transport
cre03015  mRNA surveillance pathway
cre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CHLRE_03g199647v5
  09122 Translation
   03013 Nucleocytoplasmic transport
    CHLRE_03g199647v5
   03015 mRNA surveillance pathway
    CHLRE_03g199647v5
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cre03019]
    CHLRE_03g199647v5
   03041 Spliceosome [BR:cre03041]
    CHLRE_03g199647v5
   03009 Ribosome biogenesis [BR:cre03009]
    CHLRE_03g199647v5
   03012 Translation factors [BR:cre03012]
    CHLRE_03g199647v5
Enzymes [BR:cre01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CHLRE_03g199647v5
Messenger RNA biogenesis [BR:cre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CHLRE_03g199647v5
   mRNA cycle factors
    Stress granule specific factors
     CHLRE_03g199647v5
Spliceosome [BR:cre03041]
 Complex C
  Other components
   EJC/TREX
    CHLRE_03g199647v5
Ribosome biogenesis [BR:cre03009]
 Eukaryotic type
  90S particles
   Helicases
    CHLRE_03g199647v5
Translation factors [BR:cre03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    CHLRE_03g199647v5
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Helicase_RecD AAA_30 Cas3-like_C_2 AAA_22
Other DBs
NCBI-GeneID: 5724972
NCBI-ProteinID: XP_001699375
UniProt: A0A2K3DZM1
LinkDB
Position
3:8443537..8446537
AA seq 399 aa
MPPRAQDMEEDEEVKFETSKGVKVYNTFDAMGLKEELLRGLYAYGFEKPSAIQQRAVLPI
VQGRDVIAQAQSGTGKSSMISVSTCQLVDVQQRECQVLILSPTRELAQQTEKVILAVGDF
MNIQAHACVGGKSLGEDIRKLENGVHVVSGTPGRVFDMIQRRNLRTRHIKTLILDEADEM
LAKNFKDQIYDIYRYLPPETQVVLVSATLPAEVLEMTNKFMTDPIRVLVKRDELTLEGIK
QFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRQNNFTVASMHGDMV
QKEREAIMGEFRSGAARVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFG
RKGVAINFVRNDDIRILRDIEQYYSTQIDEMPMNVAELI
NT seq 1200 nt   +upstreamnt  +downstreamnt
atgccccctcgggctcaggacatggaggaggatgaggaggtcaagtttgagacctcaaag
ggcgtcaaggtgtacaacacctttgacgccatgggtctgaaggaggagctgcttcgcgga
ctgtatgcgtatgggtttgagaagccatccgccatccaacagcgtgcagtgctgcccatc
gtgcaaggtcgcgacgtcattgcgcaggcgcagtcgggcacgggtaaatcatccatgatt
tccgtgtcgacgtgccagctggtggacgtgcagcagcgcgagtgccaggtcctaattctg
tcacccactcgtgagctggcgcagcagactgagaaggttatcctggccgtgggtgacttc
atgaacattcaggcgcatgcttgcgtcggtggcaagagcctgggtgaggacatccgcaag
ctggagaacggcgttcacgtggtgtcgggcacgcccggccgtgtgttcgatatgatccag
cgccgaaacctgcgcacgcgccacatcaagacgctgatcctggatgaggcggatgagatg
ctggccaagaacttcaaggaccagatctacgacatctaccggtacctgccgcccgagacc
caggtggtactggtgagcgccacgctgccggcggaggtgctggagatgaccaacaagttc
atgacggaccccatccgcgtgctcgtcaagcgtgatgagctgacgctcgagggaatcaag
caattcttcgtggcagtggagcgggaggagtggaagtttgacaccctgtgcgacctgtac
gacacgctgaccatcacccaggctgtcatcttctgcaacaccaagcggaaggtggactgg
ctgacggagaagatgcggcaaaacaacttcacggtggcgtccatgcacggagacatggtg
cagaaggagcgcgaagccatcatgggggagttccgctccggcgccgcgcgtgtgctcatc
acgaccgacgtgtgggctcgcggtctggacgtgcagcaggtgtcgctggtcatcaactac
gacctgcccaacaaccgtgagctgtacatccaccgcattggccgctccggacgcttcggc
cgcaagggtgtggccatcaacttcgtgcgcaacgacgacatccgcatcctgcgcgacatt
gagcagtattactccacacagattgatgagatgccaatgaacgtggccgagctcatctga

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