Chlamydomonas reinhardtii: CHLRE_04g223850v5
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Entry
CHLRE_04g223850v5 CDS
T01039
Name
(RefSeq) uncharacterized protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cre
Chlamydomonas reinhardtii
Pathway
cre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHLRE_04g223850v5
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cre03019
]
CHLRE_04g223850v5
03036 Chromosome and associated proteins [BR:
cre03036
]
CHLRE_04g223850v5
Enzymes [BR:
cre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHLRE_04g223850v5
Messenger RNA biogenesis [BR:
cre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
CHLRE_04g223850v5
mRNA degradation factors
5'-3' decay
Decapping complex
CHLRE_04g223850v5
Chromosome and associated proteins [BR:
cre03036
]
Eukaryotic type
Gene silencing
piRNA pathway
CHLRE_04g223850v5
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
NA-iREase2
DS
Motif
Other DBs
NCBI-GeneID:
5717886
NCBI-ProteinID:
XP_001692202
UniProt:
A8IT25
LinkDB
All DBs
Position
4:2780537..2783387
Genome browser
AA seq
405 aa
AA seq
DB search
MATNEDWKQRLNLPPKDARVRTEDVTNTKGNEFEDYFLKRELLMGIFEKGFEKPSPIQEE
SIPIALAGRDILARAKNGTGKTAAFCIPVVERVDPTRPVIQALLLVPTRELALQTAQVCK
ELSKYLSIEVMVTTGGTSLKDDIMRLYQTTHIVVATPGRVVDLASKGVARLNECRMLVMD
EADKLLSPEFQPVVEQLIGYLPDDRQIMLYSATFPVTVKAFKEKFLRKPYIINLMEELTL
KGVTQFYAFVEEKQKVHCLNTLFSKLRINQSIIFCNSVNRVELLAKKITELGYSCYYIHA
KMLQSHRNRVFHDFRNGHCRNLVSSDLFTRGIDIQSVNVVINFDFPKNAETYLHRVGRSG
RFGHLGLAVNLITYDDRINLFKIEQELGTEIKPIPAQIEEKLYCI
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaacgaggactggaagcagcggctgaacctgccacccaaggatgcgcgcgtg
cgcaccgaggatgtcacgaacaccaagggcaacgagttcgaggactacttccttaagcgc
gagctgctgatggggattttcgagaagggtttcgagaagccctcccccattcaagaagag
tctattcctatcgcgctggccggacgtgatatcctggcgcgtgccaagaacggaacggga
aagacggcagcattctgcatcccggtggtggagagggtcgatcccactcggcctgtgatc
caagccctccttctggtgccgactcgcgagctggcgctgcaaaccgcgcaagtgtgcaag
gagctgtcgaagtacctgagcatcgaggtgatggtcaccaccggtggcactagcctaaag
gacgatatcatgcgtctctaccaaacgacgcacatcgttgttgccacgcccgggcgcgtg
gtggacctggcgagcaagggcgtggcccgcctcaacgagtgccggatgctggtgatggac
gaggcggacaagctgctgtcgccggagttccaacccgtggtggagcagctcatcggctac
ctgcccgacgaccggcaaatcatgctgtactcggctaccttcccggtgaccgtgaaggcc
ttcaaggagaagttcctccggaagccctacatcatcaacctcatggaggagctcacactg
aagggtgtgacgcagttctacgcgttcgtcgaggagaagcagaaggtgcactgcctcaac
acgcttttctccaagctgcgcatcaaccagtcgatcatcttctgcaactccgtcaaccgt
gtggagttgctggcgaagaagattacggagctgggctacagctgctactacattcacgct
aagatgctgcagagccaccgcaaccgcgtcttccacgacttccgcaacggccattgccgc
aacctggtgtcgtcggacctcttcacgcgtggcattgacattcagtcggtgaacgtcgtc
atcaacttcgacttcccgaagaacgcggagacctacctgcaccgcgtcggccgctcgggc
cggttcggccacctgggtctggccgtgaacctcatcacctacgacgaccgcatcaacctg
ttcaagattgagcaggagctggggacggaaatcaagcccattccggcccagatcgaggag
aagctgtactgcatctag
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