KEGG   Chlamydomonas reinhardtii: CHLRE_05g241300v5
Entry
CHLRE_05g241300v5 CDS       T01039                                 
Name
(RefSeq) uncharacterized protein
  KO
K11098  small nuclear ribonucleoprotein F
Organism
cre  Chlamydomonas reinhardtii
Pathway
cre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CHLRE_05g241300v5
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cre03019]
    CHLRE_05g241300v5
   03041 Spliceosome [BR:cre03041]
    CHLRE_05g241300v5
   03032 DNA replication proteins [BR:cre03032]
    CHLRE_05g241300v5
Messenger RNA biogenesis [BR:cre03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     CHLRE_05g241300v5
Spliceosome [BR:cre03041]
 Complex A
  U1 snRNP components
   Sm proteins
    CHLRE_05g241300v5
  U2 snRNP components
    CHLRE_05g241300v5
 Complex B
  U1 snRNP components
    CHLRE_05g241300v5
  U4/U6.U5 tri-snRNP components
    CHLRE_05g241300v5
 Complex C
  U2 snRNP components
    CHLRE_05g241300v5
DNA replication proteins [BR:cre03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     CHLRE_05g241300v5
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 5723257
NCBI-ProteinID: XP_001697697
UniProt: A8J834
Structure
LinkDB
Position
5:complement(3430639..3431469)
AA seq 85 aa
MAAFVPVNPKPFLQDLTGKQVIVKLKWGMEYKGYLVSTDSYMNLQLASTEEYIDGQFTGQ
LGEVLIRCNNVMYLRGVPEEDEPMS
NT seq 258 nt   +upstreamnt  +downstreamnt
atggcggctttcgtgccggtgaacccgaagccgttcttgcaagacctgaccggcaagcag
gtcatcgtcaagcttaaatggggcatggagtacaagggctacctggtgtccacggactcg
tacatgaacctgcagcttgcgagcacggaggagtacattgacggccagttcaccggccag
ctcggagaggtgctcattcgttgcaacaacgtgatgtacttacgaggagtgccagaggag
gacgagcccatgtcatag

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