Chlamydomonas reinhardtii: CHLRE_06g289950v5
Help
Entry
CHLRE_06g289950v5 CDS
T01039
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cre
Chlamydomonas reinhardtii
Pathway
cre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHLRE_06g289950v5
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cre03019
]
CHLRE_06g289950v5
03041 Spliceosome [BR:
cre03041
]
CHLRE_06g289950v5
03009 Ribosome biogenesis [BR:
cre03009
]
CHLRE_06g289950v5
03016 Transfer RNA biogenesis [BR:
cre03016
]
CHLRE_06g289950v5
Enzymes [BR:
cre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CHLRE_06g289950v5
Messenger RNA biogenesis [BR:
cre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CHLRE_06g289950v5
Spliceosome [BR:
cre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CHLRE_06g289950v5
Complex C
U4/U6.U5 tri-SnRNP related factors
CHLRE_06g289950v5
Ribosome biogenesis [BR:
cre03009
]
Eukaryotic type
Pre-60S particles
Helicases
CHLRE_06g289950v5
Transfer RNA biogenesis [BR:
cre03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CHLRE_06g289950v5
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
CCDC22_CC
AAA_22
DLP_helical
nSTAND3
Motif
Other DBs
NCBI-GeneID:
5721076
NCBI-ProteinID:
XP_042924112
UniProt:
A0A2K3DQ74
LinkDB
All DBs
Position
6:complement(6107729..6120965)
Genome browser
AA seq
1086 aa
AA seq
DB search
MELSPEGLAAAAATRQAAKKRSQSEDKPVVNGAAATNPAGTAKRQQGPGGRPPATCTHEV
AIPEGYDEAAAAEKLDPVIHGTLQEPVYTGPRAKEYPFVLDAFQETSVACLERRESVLVS
AHTSAGKTVVAEYAIAMAFRAQQRVIYTSPLKALSNQKFRELSEAFGGDVGLMTGDVSLN
PNASCIVMTTEILRSMIYRGSELLREVAWVVFDEVHYMQDRERGVVWEETIIFLDHHTKM
VFLSATLSNSSQFAAWVAHLHKSPCHVVYTDYRPTPLQHYAYPLGGEGLYLLLDERGNFR
TENFERVKESLAMTAGPSGGDGGDAEGADGGADGGRGGGRGGRGGRGGRGRGGRGGGGRG
PGGKPPDMREQVATILQVIKLQKWEPVIFFSFSRRDCEQYANALVAKRSKDKGGNDKEAP
ADEAERERERLFDFNSAEEKVQVEEIYANALQCLSEEDRELKPIARMLPLLRRGIGVHHS
GLLPILKELIEILFQEGLLKVLFTTETFAMGLNMPARCVVFTAMKKWDGTENRWVNSGEY
IQMSGRAGRRGMDDRGLCLMMLDAALDEATVRGIMQGKPSPLISSFKLTYYTMLNMLRRL
EGSEAGSMAYVIAHSFQQFQQEAQLPKMEKELSEIQEEMAALGKEGEEAMASYQQLRTDI
SEAAGQLQALLTQPSHCLPFLRAGRLVRVSSGGVDWGTGVVVSVMRRPDAAPAAEGEDDR
DSYLVDCILSLDAASLPAAANTATQGQQQPATEAGPPQPAPPGSPGSAAEVVPVTLSCLA
QLHSLRISVPPDLRPAEARRQVMVQVGELLKRHGEAGLPRLDPIEDMDIRHPQLPEIVAR
IEGLESQLVRNPVYKAEKDAAKFAPYLKRAALAARAEELRGAMRTSQLAAFREEAACRTA
VLRRLGHIDEEDVVTLKGRAACEIDTADELLASELLLNGTFSGLDSHALVALASCLIPVE
KSTETIKLTTQLAEPLAQLQAAARHIAEVSRECKLDLDPDEYVDGFKPALMDVIYAWSKG
ASFAQVCEMTDIFEGSLVRATRRLDELMGQLANAAAAVGDNELAGKIRAAAETIRRDIMF
AASLYI
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggagctctctcccgagggcctcgcggccgctgcggccacgcgacaagcggctaagaag
cgtagccaaagcgaggacaaaccggtggtgaacggcgctgccgcgacaaacccggcggga
acagccaagcggcagcaagggccgggcggccgcccccccgccacctgcacccacgaggtc
gccatcccggagggctatgacgaggcggcagctgctgagaagcttgaccctgtcattcat
ggcaccctgcaggagcctgtgtacacgggcccccgggccaaggagtacccgttcgtgttg
gacgccttccaggagacgagcgtggcgtgcctggagcggcgggagtctgtgctggtgtcc
gcacacacctccgcgggcaagaccgtggtggccgagtacgccattgccatggccttccgg
gcgcagcagcgggtcatctacacctcgccgctcaaggccctgtccaaccagaagttccgg
gagctgtcggaggcgttcggcggcgacgtggggttgatgacgggcgacgtgtcgctcaac
cccaacgcctcctgcatcgtcatgaccacggagatcctccggtccatgatctacaggggc
agtgagctgcttcgcgaggtggcgtgggtggtgtttgacgaggtgcactacatgcaggac
cgggagcgcggtgtggtgtgggaggagaccatcatcttcctagaccaccacaccaagatg
gtgttcctgtccgccacgctgtccaactccagccagtttgcggcctgggtggcgcacctg
cacaagagcccctgccacgtcgtgtacaccgactaccgccccacgccgctgcagcactat
gcctacccgctgggcggcgaggggttgtacctgctgctggacgagcgcggcaacttcagg
accgagaacttcgagcgagtgaaggaaagcctggccatgactgcggggccgtcaggaggt
gatggcggcgacgcagagggcgcggacggcggcgccgacggcggtcgcggcggcgggcgg
ggtgggcgtggcgggcgcggcggacgcggccgaggcgggcgaggcggcggcgggagaggg
cctggtggcaagccgcccgacatgcgcgagcaggtggcgaccatcctgcaggtgatcaag
ctgcagaagtgggagcccgtcatcttcttctccttctcccgccgcgactgcgagcagtac
gccaacgcgcttgtggccaagcgctccaaggacaagggcggcaacgacaaggaggcgccg
gcggacgaggcagagcgcgagcgcgagcggctgttcgacttcaacagcgcggaggagaag
gtgcaggtggaggagatctacgccaacgcgctgcagtgcctgagcgaggaggaccgcgag
ctgaagcccatcgcgcgcatgctgccgctgctgcgccgcggcatcggcgtgcaccactcg
ggcctgctccccatcctgaaggagctgattgaaatcctgttccaggaggggctactcaag
gtgctgttcacgaccgagacgttcgccatgggcctcaacatgccggcccgctgtgtggtg
ttcacggccatgaagaagtgggacggcaccgagaaccgctgggtcaacagcggggaatac
atccagatgtcgggccgcgccggccgccgtggcatggacgaccgcgggttgtgcttgatg
atgctggacgcggcgctggacgaggccactgtgcgcggcatcatgcagggcaagcccagc
ccgctgatcagctccttcaagctgacctactacaccatgctcaacatgctgcggcgcctg
gagggcagcgaggcgggcagcatggcctacgtcatcgcgcacagcttccagcagttccag
caggaggcgcagctgcccaagatggagaaggagctgtcagagatccaggaggagatggca
gccctgggcaaggagggcgaggaggccatggccagctaccagcagctgcgcaccgacatc
tccgaggccgcggggcagctgcaggcgctgctgacgcagccgagccactgcctgcccttc
ctgcgcgcggggcggctggtgcgcgtcagcagcggcggcgtggactggggcaccggcgtg
gtggtgtcggtcatgaggcgcccggacgccgcgcccgcagcggagggcgaggacgaccgt
gactcctacctggtggactgcatcctgtccctggacgccgcatcgctgccggcagccgcc
aacaccgccacacaggggcagcagcagcccgcgaccgaggccggcccgccgcagcctgcg
ccgcccggctccccgggctccgcagccgaggtagtgcctgtgaccctgtcgtgcctggcg
cagctgcacagcctgcgcatcagcgtgccgccggacctcaggccggcggaggcgaggagg
caggtcatggtgcaggtgggcgagctgctgaagcggcacggcgaggcgggtctgccgcgc
ctggaccccatcgaggacatggacatacgccacccacagctgccagagatcgtggcccgc
attgagggtctggagtcgcagctggtgcggaaccccgtgtacaaggcggagaaggacgcc
gccaagttcgctccctacctcaagcgcgccgcgctggcggcccgcgccgaggagctgcgc
ggcgccatgcgcaccagccagctggcggcgttccgggaggaggcggcgtgcaggaccgcg
gtgctccggcggctgggacacatcgacgaggaggacgttgtgactctcaagggccgcgcc
gcctgtgagatcgacacggccgatgagctgctggcctcggagctgctgctcaacggcacc
ttcagcggactggacagccacgcgctggtggccctggcctcatgcctcatccccgtggag
aagtctacagagaccatcaagctcaccacacaactggcggagccgctggcgcagctgcag
gccgcggcgcgacacatcgcggaggtcagccgtgagtgcaaactggatttggatccggac
gagtacgtggacggattcaaacccgcgctcatggacgtcatctacgcctggagcaagggc
gccagcttcgcgcaggtgtgcgagatgacggacatctttgagggcagcctggtgcgcgcc
acgcggcggttggacgagctgatggggcagttggccaacgcggcggcggcggttggcgac
aacgaactggcgggtaagatccgcgccgccgccgagaccatccgccgtgacatcatgttc
gcggcctcgctgtacatctga
DBGET
integrated database retrieval system
