Chlamydomonas reinhardtii: CHLRE_11g467766v5
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Entry
CHLRE_11g467766v5 CDS
T01039
Name
(RefSeq) uncharacterized protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cre
Chlamydomonas reinhardtii
Brite
KEGG Orthology (KO) [BR:
cre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cre03016
]
CHLRE_11g467766v5
Enzymes [BR:
cre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CHLRE_11g467766v5
Transfer RNA biogenesis [BR:
cre03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CHLRE_11g467766v5
Prokaryotic type
tRNA splicing ligases
CHLRE_11g467766v5
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
5725070
NCBI-ProteinID:
XP_001699521
UniProt:
A8JC00
A0A2K3D806
LinkDB
All DBs
Position
11:complement(1617795..1627330)
Genome browser
AA seq
505 aa
AA seq
DB search
MPRSYAEEVAFIRQLGPVKYEVSPGFVPGMHVPGTFYVNDALKGLLFEELQQAVVRGDHG
GFLPAVKQLANVAALPGIVKRSIALPDVHSGYGFAIGNVAAFDMDNPEAVVSPGGVGFDI
NCGVRLLRTNLTEAEVGPVREQLAQALFDHIPVGVGSQGIIPTTAKDMESALELGMDWSL
REGYAWAEDKEHCEEYGRMLNADPRYVSSRAKKRGLPQMGTLGAGNHYAEVQVVDEVYDA
VAARRMGIDTPGQVVVMIHSGSRGLGHQVATDALVAMERAMARDGIITNDRQLACARINS
EEGQAYLKAMSCAANYAWVNRSSMTFLARQAFAKIFKSTPDDLDMHVVYDVSHNIAKVEQ
HCVDGQHRRLLVHRKGSTRAFPPHHPLIPADYQLIGQPVLVGGTMGTSSYVLTGTEQGFT
ETFGSTCHGAGRARSRNNSRNKLDYQDVLDNLKAKGIAIRVASPKLVMEEAPESYKDVSE
VVDTCHQAGISKKAVKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgccacgctcatacgccgaggaggtggcctttatacggcagctggggcctgtcaagtac
gaggtgtcgcccgggttcgtgccgggtatgcacgtgcccggcaccttctacgtcaatgat
gcgctcaaggggctcctgttcgaagagttgcagcaagcggtggtgcgcggcgatcacggc
ggattcctgccggcagtgaagcagctcgccaacgtggccgctctgcccggcattgtgaag
cgctcgatcgcactccctgacgtgcactccgggtatggcttcgcaatcggcaacgtggcg
gcattcgacatggacaatcccgaagcggtggtgtcgccgggcggagttggcttcgacatc
aactgcggcgtgcggctgctgcgcaccaacttgacagaggccgaggtgggcccggtgcgg
gagcagctggctcaggcgctgtttgaccacatccccgtgggcgtgggtagccagggcatc
atccccaccacggctaaggacatggagtccgctctggagctgggcatggactggtcgctg
cgggagggctacgcctgggctgaggacaaggagcactgcgaggagtacggccgcatgctc
aacgcggacccgcgctacgtgagctcgcgcgccaagaagcgcggcctgccgcagatgggc
accctgggggcgggcaaccactacgccgaggtgcaggttgtggacgaggtgtacgacgcc
gtggctgcccggcgcatgggcatcgacacgccgggccaggtggtggtgatgatccacagc
ggcagcagggggctggggcatcaggtggccactgacgcgttggtggccatggagcgggcc
atggcgcgggacggcatcatcaccaacgacaggcagctggcctgcgcgcgcatcaacagc
gaggaggggcaagcatacctgaaggccatgtcctgcgccgccaactacgcctgggtcaac
cgcagcagcatgaccttcctggcgcggcaggcgtttgccaagatcttcaaatccactcct
gatgacctcgacatgcacgtggtgtacgacgtctcacacaacatcgccaaggtggagcag
cactgtgtggacggccagcataggcggctgctggtgcaccgcaagggctccacgcgcgcc
ttcccgccgcaccacccgctgatccccgccgattaccagctgatcggccagccggtgttg
gtgggcggcaccatgggcacctcctcctacgtcctcaccggcaccgagcagggtttcact
gagacgttcggctccacgtgccacggcgcgggccgcgcccgcagccgcaacaacagccgc
aacaagctggactaccaggacgtcctggacaacctcaaggccaagggcatcgccatccgt
gtggcctcgcccaagctggtcatggaggaggcgccggagagctacaaggacgtgagcgag
gtggtggacacgtgccaccaggcgggcatcagcaagaaggcggtgaagctgcggcccatt
gcggtcatcaaggggtga
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