KEGG   Chlamydomonas reinhardtii: CHLRE_12g498050v5
Entry
CHLRE_12g498050v5 CDS       T01039                                 
Name
(RefSeq) uncharacterized protein
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cre  Chlamydomonas reinhardtii
Pathway
cre03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cre00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CHLRE_12g498050v5
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cre03021]
    CHLRE_12g498050v5
   03019 Messenger RNA biogenesis [BR:cre03019]
    CHLRE_12g498050v5
Transcription machinery [BR:cre03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     CHLRE_12g498050v5
Messenger RNA biogenesis [BR:cre03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     CHLRE_12g498050v5
    U7-dependent histone pre-mRNA processing factors
     CHLRE_12g498050v5
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B_6 Lactamase_B RMMBL Anti-Pycsar_Apyc1 Lactamase_B_2 Beta_lactamase3 Lactamase_B_3
Other DBs
NCBI-GeneID: 5727892
NCBI-ProteinID: XP_042918329
UniProt: A0A2K3D3G0
LinkDB
Position
12:complement(3283123..3289248)
AA seq 729 aa
MAATAKRKIDEGPADGEPDTSTHAHIIPLGAGSEVGRSCIIFKYQDKTVMFDCGIHPAFK
GMDSLPLLDEIDIDTVDVALITHFHLDHCAAVPYLLRKTRFKGRIFMTHPTKAIYYSLLR
DLAKGSKHSSEEALFNEDDLEASMQRIEVVDFYQTIEVAGMQITPYRAGHVLGAAMFLVE
VAGCRCLYTGDYSRLPDRHLPAADIPPVKPHIVIVESTYGTSRHLPRLQREQLLLDTIRN
TINRGGRVIMPVVALGRAQELLLLLDEYWEAHKSELSGIPIYQASSMMSKALGVYQTYVE
SLNDDIKRVFHERNPFKFRHVQTLKNPAHFISDYSGPCVIMATPSGLQSGASRDFFEAWC
EDSRNTCIICDFAVQGTLAKEILGGPSSITTREGRRVPLRIAVHNISFSAHADYDQTSGF
LDAVRPPHVVLVHGEYGEMRKLAKALKDGAKAAGVAREVYTPILAQTVAVEHKPDRSVRL
QGRLGEKPPREGAAVRGVLVRQGGGFATQLLAPSDLPRYTKLLKGSVTQRQAISVDVPFT
AIRLALEVMFEGVEGAGTLPVATAPDAEGGKGGESLAVVVGELVTVRYVPADDASGVVSH
VVLEWEGGRQGDMVADAVVAVVLQSIGEPPEATSAESAMLAARAAGDEAAAAAAELHLIG
ALLRGQFGPAAVDEAGGLVRLDVDGVEAAVDYRAGKVVCGEPGLRARIEKSLDRLAAAIR
PAPLDRPHD
NT seq 2190 nt   +upstreamnt  +downstreamnt
atggcagcaacggcgaagcggaaaatagatgaagggcccgctgacggcgagcctgacacg
tccacgcatgcacatatcattcctctaggagctggctcagaagtgggccgctcatgtatt
atcttcaagtaccaggacaagactgttatgtttgactgtggcatccatcccgccttcaag
ggaatggatagcctgcccctgctggacgaaatcgacattgacacggtggacgtggcgctc
atcacccacttccacctggatcactgcgccgcggtcccctacctgctgcgaaagacccgc
ttcaagggccgcatcttcatgacgcaccccaccaaggccatctactactcgctgctgcgg
gacctggccaagggctccaagcacagcagcgaggaggctttgttcaatgaggacgacctg
gaggccagcatgcagcgcatcgaggtggtggacttctaccagaccatcgaggtggcggga
atgcagatcacgccgtaccgggccggccacgtgctgggtgccgccatgttcctggtggag
gtggcgggctgcaggtgcctctacacaggcgactacagccgcctgccggacaggcacctg
cccgcggcagacataccgcccgtcaagccgcacatagtgattgtggagagcacgtacggc
accagccggcacctgccccgcctgcagcgcgagcagctgctgctggacaccatccgcaac
accatcaaccgcggcggccgagtcatcatgcccgtggtggcgctggggcgcgcgcaggag
ctgctgctgctgctggacgagtattgggaggcgcacaagtcggagctgagcggcataccc
atataccaggccagctctatgatgagcaaggcacttggtgtgtaccagacgtacgtggag
tcactcaacgacgacatcaagagggtcttccacgagcgcaaccccttcaagttccggcat
gtgcagacgctcaagaaccccgcccacttcatctccgactacagcggcccctgcgtcatc
atggccacgccctcggggctgcagagtggcgccagccgggacttctttgaggcctggtgc
gaggacagccgcaacacctgcatcatctgcgacttcgcggtgcagggcactctggccaag
gagatcctgggcggccccagctccatcaccacccgggagggccgcagggtcccgctgcgc
atcgcggtgcacaacatctccttctccgcgcacgctgactacgaccagacgtccggcttc
ctggacgcggtccggccgccgcacgtggtgctggtgcacggcgagtacggcgagatgcgc
aagctggccaaggcgctcaaggacggcgccaaggcggcgggggtggcgcgcgaggtgtac
acacccatactggcacagaccgtggcggtggagcacaagcccgaccgcagcgtgcggctg
cagggccgcctgggcgagaagccgccgcgtgagggcgcggccgtgcgcggcgtgcttgtg
cggcagggcggcggcttcgccacgcagctgctggcgccctccgacctgccgcgatacacc
aagctgctcaagggcagtgtcacgcagcgccaggccatcagcgtggacgtgccgttcacc
gccatccggttggcgctggaggtgatgtttgagggcgtggagggagccggcacgctgccc
gtggccacggcaccggacgcggagggcggcaagggtggcgagagcctggcggtggtggtg
ggcgagctggtgacggtgcgctacgtgccggcggacgacgcgagcggcgtggtgtcgcac
gtggtgttggagtgggagggaggccggcagggcgacatggtggcggacgcggtggtggct
gtagtgctgcagtccattggcgagccgcccgaggccaccagcgccgaatccgccatgctg
gcggcgcgcgccgccggcgacgaggccgcagccgcagccgccgagctccacctgattggc
gcgctgctgcgcggccagttcgggccggcggcggtggacgaggcgggcggcctggtgcgg
ctggacgtggacggcgtggaggccgctgtggactaccgggcgggcaaggtggtgtgcggc
gagccggggctgcgggcgcgcatcgagaagagcctggaccggctggcggcggcgatacgg
cccgcgccgctggaccggccgcatgactag

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