Chlamydomonas reinhardtii: CHLRE_12g504000v5
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Entry
CHLRE_12g504000v5 CDS
T01039
Name
(RefSeq) uncharacterized protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
cre
Chlamydomonas reinhardtii
Pathway
cre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHLRE_12g504000v5
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cre03019
]
CHLRE_12g504000v5
Enzymes [BR:
cre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
CHLRE_12g504000v5
Messenger RNA biogenesis [BR:
cre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CHLRE_12g504000v5
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CHLRE_12g504000v5
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
5716439
NCBI-ProteinID:
XP_042918236
UniProt:
A0A2K3D327
LinkDB
All DBs
Position
12:complement(2678921..2682936)
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AA seq
525 aa
AA seq
DB search
MLGRAWSQPPRTVVVAASGAAKAPRHTLTAMTYNLLADKYARGGWHGYCPPQHLTWDSRR
ERILQEIESYSSDIICLQEVEAQVFAGELQPWLAARGYRGHYLPRQYGDSVHGPPEGVAL
FYRTEVFDLEQQHSFLFNSVPTSPPAPGSALASLADAEEPSAVGAAAAVVAAVTAAADTV
GSGRASGSEVGAVVDSDAPQAAAEAPVASTSGNAEAANSRKRERRSGSKARGASGSGSED
SSDEEEERRAAASGSGNGGGGASTSGRGRSNEFWSMFKKRQEGAILALLRHRASKRQLLA
ACTHLFWNPAFADVKAFQATVLCSEMAGFLTRHVGPDAPSSVPVVLGGDFNSVACKRVPD
VFDPKLPRDGQASGVYALLTRGSLPPSHPDHPASRRRPGEAANADFKGQPLTTSGIQLAS
SYVVAHGMDPPLTTRTNNFAGCLDYIFVSPRHFDVLRTLELPYEHSSGEEAPRGDPGRGG
AGGGKGEAAGTYPGVRDPMDVPFPPIPNEVFPSDHLSLAVVLGLR
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgttggggcgggcgtggtctcagccaccgcggacggttgtggtggcggcatcaggagca
gcaaaggcgccgcgccacacactgacagccatgacgtacaacctactagcggacaaatac
gcccgcggagggtggcacggctactgcccaccgcagcacctgacctgggactcccgccgc
gagcgtatcctgcaggagatcgagtcctacagcagcgacatcatctgcctgcaggaggtg
gaggcgcaggtgttcgcgggcgagctgcagccctggctggcggctcgcggctaccgcggc
cactacctgccccggcagtacggagacagcgtgcacggcccgcccgagggggtggcactg
ttctaccggactgaggtttttgacctcgagcagcagcactcgttcctgttcaactcggtg
cccaccagcccgcctgcgccggggtcggccttggcctcgctcgcggacgcggaagagcct
tcggccgtaggcgcagcggcagcagtagtggcagcagttacggcggcagcggatacggta
ggcagcgggagagcaagcggatcggaggtgggggcagtggtggactcggacgcgccgcag
gcggcagcagaagcccctgtggcgtcgacgtccggcaatgcggaagctgccaacagccgg
aaacgggaacggagatcagggtcgaaggcaagaggggcgtctggatcaggcagtgaggac
tcatcggacgaggaggaggagcggcgggcagcggcgagtggcagcggcaacggcggcggc
ggggctagcacgagcgggagaggtcgcagcaatgagttctggagcatgttcaagaagcgg
caagagggcgccatcttggccctgctgcggcaccgtgccagcaagcggcagctgcttgcg
gcgtgcacgcacctgttctggaatcctgcctttgcggatgtcaaggctttccaggccacc
gtgttgtgcagcgagatggcggggttcctgacgcgccacgtgggccccgacgcgcccagc
tcggtgccggtggtgctgggcggcgacttcaacagcgtggcgtgcaagcgcgtgcccgac
gtgtttgaccccaagctgccgcgtgacgggcaggctagcggtgtgtatgcgctgctcact
cgcggcagcctgccgcccagccaccccgaccaccccgccagccggcgccggcccggcgag
gcagccaacgccgacttcaaggggcagccgctcaccacctccggcatccagctggcgtcc
agctacgtcgtggcgcacggcatggacccgccgctcaccacgcgcaccaacaacttcgcg
ggctgcctggactatatcttcgtcagcccgcggcactttgacgtgctgcgcaccctagag
ctgccgtacgagcacagctcgggcgaggaggcgccccggggggatccgggcaggggcggc
gcgggtgggggaaagggcgaggcagccggcacgtacccgggtgtgagggaccccatggac
gtgcccttcccgcccatccccaatgaagtgtttccctcggaccatctgtcgctcgccgtg
gtgctgggtctgcggtga
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