KEGG   Chlamydomonas reinhardtii: CHLRE_12g505750v5
Entry
CHLRE_12g505750v5 CDS       T01039                                 
Name
(RefSeq) uncharacterized protein
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
cre  Chlamydomonas reinhardtii
Pathway
cre03020  RNA polymerase
cre03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CHLRE_12g505750v5
  09124 Replication and repair
   03420 Nucleotide excision repair
    CHLRE_12g505750v5
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cre03021]
    CHLRE_12g505750v5
   03400 DNA repair and recombination proteins [BR:cre03400]
    CHLRE_12g505750v5
Transcription machinery [BR:cre03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     CHLRE_12g505750v5
DNA repair and recombination proteins [BR:cre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CHLRE_12g505750v5
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS Zn_ribbon_Elf1 Zn_ribbon_PaaD Zn_ribbon_IS1595 Fer4_10 Fer4_21 Zn_ribbon_4 EDR4-like_1st
Other DBs
NCBI-GeneID: 5716471
NCBI-ProteinID: XP_001690821
UniProt: A8IJY1
LinkDB
Position
12:complement(2545473..2546602)
AA seq 118 aa
MASRKRGLKFCPETNDLLYPREDKERRVLEYYCKTCNYCVQADPSEWCVYVHATVVDEKD
KITTLYDVTADPTLPRTRDVRCPKCNHNEAVFVSEPTEQGMTLYFHCVACREKWRDYV
NT seq 357 nt   +upstreamnt  +downstreamnt
atggcgtctcgcaagcgcgggctgaaattctgccccgagacgaacgacttgctgtaccct
cgagaggacaaggagcggcgggtgctggagtactactgcaagacgtgcaactactgtgtg
caggcggatccctcggagtggtgcgtgtacgtgcacgccacagtggtggacgagaaggac
aagatcacgacgctgtacgacgtcacggcggatcccacgctgccgcgcacgcgcgatgtg
cgctgcccaaagtgcaaccacaacgaggcggtgtttgtgtcagagccgacggaacagggc
atgacgctatatttccattgcgtggcgtgccgagagaagtggcgcgactacgtatga

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