KEGG   Chlamydomonas reinhardtii: CHLRE_12g538750v5
Entry
CHLRE_12g538750v5 CDS       T01039                                 
Name
(RefSeq) uncharacterized protein
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
cre  Chlamydomonas reinhardtii
Pathway
cre03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CHLRE_12g538750v5
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cre03019]
    CHLRE_12g538750v5
Messenger RNA biogenesis [BR:cre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CHLRE_12g538750v5
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CHLRE_12g538750v5
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 5718440
NCBI-ProteinID: XP_001692854
UniProt: A8IVB1
LinkDB
Position
12:complement(6516480..6517887)
AA seq 126 aa
MASLQEVPLPGTALAEELDQRLLVVLRDGRKLLGTLRSFDQFANLVIEGAVERIIVGEQF
GDIPMGLQIIRAENVVLLGRVDEAIDAPEGLTRIPAAQIKEAQKGEKELNKLKSTIRARM
DFLDLD
NT seq 381 nt   +upstreamnt  +downstreamnt
atggcgtcactccaagaagttcccttgcctggaacggcgctagcggaggagctggatcag
cggctgttggtagttttgcgcgatgggcgcaaattgctcggcacgctccggtcctttgac
cagttcgcaaacctcgtcattgaaggagctgtggagcggattattgttggagagcagttc
ggcgacatccctatgggcctgcaaattatccgcgcggagaatgtggtgctgctggggaga
gtggacgaggcgatagacgccccggagggcctcacgcgcatacctgccgcgcaaatcaag
gaggcacagaagggggagaaggagctgaacaagctgaagagcacgatacgtgcgcggatg
gacttcctggacctggactga

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