KEGG   Chlamydomonas reinhardtii: CHLRE_17g719000v5
Entry
CHLRE_17g719000v5 CDS       T01039                                 
Name
(RefSeq) uncharacterized protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
cre  Chlamydomonas reinhardtii
Pathway
cre03013  Nucleocytoplasmic transport
cre03015  mRNA surveillance pathway
cre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CHLRE_17g719000v5
  09122 Translation
   03013 Nucleocytoplasmic transport
    CHLRE_17g719000v5
   03015 mRNA surveillance pathway
    CHLRE_17g719000v5
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cre03019]
    CHLRE_17g719000v5
   03041 Spliceosome [BR:cre03041]
    CHLRE_17g719000v5
Enzymes [BR:cre01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CHLRE_17g719000v5
Messenger RNA biogenesis [BR:cre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CHLRE_17g719000v5
Spliceosome [BR:cre03041]
 Complex C
  Other components
   EJC/TREX
    CHLRE_17g719000v5
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CHLRE_17g719000v5
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 P-loop_SecA ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 5729315
NCBI-ProteinID: XP_001703776
UniProt: A8JIJ1
LinkDB
Position
17:2818792..2822333
AA seq 435 aa
MADPANEEELLDYEEDDVAEAEAVGKAGQEKKGYVGIHATGFKELMLKPELLQAIADCGF
EHPSEVQHECIPHAILGNDVLCQAKSGMGKTAVFVLSILQQLDPKANECHAIILCHTREL
AFQICHEFTRFSARMKGVTIGNFYGGIPVTQNKETLKKAVPNIVVGTPGRIKQLAKEGAL
PLKHVRFFVLDECDKMLEKLDMRADCQEIFKLTPHEKQVMMFSATLNQDMRGVCKKFMTN
PQEVYVDDESKLTLHGLVQHYVMLHEEEKNRKLNDLLDALDFNQVVIFVKSVARAKMLNT
LLNECNFPSVCIYGGMDQEERIKVYKHFKEGKHRILVATDLVGRGIDIERVNIVINYDMP
ESDDKSKGESKHGNGADTYLHRVGRAGRFGTKGLAITFVSSQEDSAVLNAVQDRFDVDIK
PLPEKIDASTYMNTN
NT seq 1308 nt   +upstreamnt  +downstreamnt
atggccgaccccgctaacgaggaggagctgctcgactacgaggaggatgacgtagccgag
gccgaggccgttggcaaggctggtcaggagaagaagggctatgtgggcatccacgcgacc
ggcttcaaggagctcatgctcaagcctgagctgctccaggccatcgctgactgcggtttc
gagcacccctctgaggttcagcacgagtgcattccgcacgcaatcctgggtaacgatgtg
ctgtgccaggccaagtcgggtatgggcaagaccgcggtgttcgtcctgtccatcctccag
cagctggaccccaaggccaacgagtgccatgccatcattctgtgccacactcgcgagctg
gcgttccagatttgccacgagttcacgcgcttcagcgcgcgcatgaagggtgtgactatc
ggcaacttctacggtggcattcctgtgacgcaaaacaaggagaccctgaagaaggcggtc
ccgaacatcgttgtcggcacgcccggccgcattaagcagctggccaaggagggcgcgctg
cctctgaagcacgtgcgcttcttcgtgctggacgagtgcgataagatgctggagaagctg
gatatgcgcgcggactgccaggagatctttaagctgacgccgcacgagaagcaggtcatg
atgttctccgccacgctaaaccaggacatgcgcggcgtctgcaagaagttcatgaccaac
ccgcaagaggtgtacgtggacgacgagtccaagctgacgctgcacggcttggtgcagcac
tacgtgatgctgcacgaggaggagaagaaccgcaagctcaacgacctgctggacgctctg
gacttcaaccaggtggtcatcttcgtcaagagcgtggcgcgcgccaagatgctcaacact
ctgctgaacgagtgcaacttccccagcgtgtgcatctacggcggcatggaccaggaggag
cgcatcaaggtgtacaagcacttcaaggagggcaagcaccgcatcctggtggccaccgac
ctggtgggccgcggtatcgacattgagcgcgtcaacatcgtcatcaactacgacatgccc
gagtccgacgacaagtccaagggcgagtccaagcacggcaacggcgcggacacctacctg
caccgcgtcggccgcgcgggccgcttcggcaccaagggtctggcgatcacgttcgtgtcg
tcgcaggaggacagcgcggtgctcaacgccgtgcaggaccgcttcgacgtggacatcaag
cccctgccggagaagatcgacgccagcacttacatgaacaccaactaa

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