Magallana gigas (Pacific oyster): 105317308
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Entry
105317308 CDS
T03920
Name
(RefSeq) low-density lipoprotein receptor-related protein 1B
KO
K20051
low-density lipoprotein receptor-related protein 4
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crg04131
]
105317308
Membrane trafficking [BR:
crg04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
105317308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
DUF5050
Sushi
EGF_LRP2
cEGF
SGL
EGF
Protocadherin
PQQ_2
Motif
Other DBs
NCBI-GeneID:
105317308
NCBI-ProteinID:
XP_011412220
LinkDB
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Position
2:26865849..26884359
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AA seq
1273 aa
AA seq
DB search
MGNKSVLSVLIFCWIFSFIPAENITDTSGIGIVVSLFSPGHLSLIAGNPNNMNMSSMSSG
KGMLPIQTYYFNTPRAKIVSMASDPRKNALFILDSDSHSIYRMENFNIWVNDSLTIVPIQ
KGVSKTSAQITYDWLNEMVYWVDGYYNWIGMQPAYTTDNSLYKIIIHQGLGRPEGIAVDP
ISGYLFYSDMGKPQRIERSSLIGKDRKSIITSGVDRVYDITVDHKEQTLYWVDAGRHTLE
SADFNGRNRRLLTRMNSVKFTSVVVFGDFLYVTSFTSNTVTKISKRTGEINLIVVVDDGI
PVGAEIWDPTNTSPVSKVCSSYGCAHMCVHLPSGPKCVCKEGYTLAENNKACVNENLQKG
LIVANSTHVCNMDIRHITALKDEMTCRVANLTGIMFMAIDIASQWLFYVDSDNHALMQYS
LIFNATTPITEAGPNVTGFAYDWLDNNILWSESDILQKGSIRIFSMDKYAHTDLYANLDN
PTYVNVNPLDREVYWIEGKGNNYTIKVGTLDGSSAKVIVNSGDLKKPTGLFYHIEKHRLF
WINWDSIYSCKTDGSDLTTHLNSISVLFFGVELMVYKDHAIWTHGKSFIMSGSIFRNNAE
VKIDTSHYGKITGMAIYDPDLQRYKRGPCEIMNGGCEHVCLPSATAQATCKCDFGFILES
DRKNCSSDALRDRFMIIADHTHGRLYQASLLDARITALDFPEVSKPACVLYNRNTKMVYW
VEIESQGSQIKQATIDGKNTKTLMEAGSVYPDRIAMDFTTGHIYFTAVASELYESYVGIL
HPQKSVHKKLITQLGTPRAIAVHPSAGYMFWTDHNKNSPHIGRAFMDGSSQRVLLSKDVV
WPNGLAIDYQENRLYWADGHQDKIESIDIYGLNRKEVLKVTNQQLVDIDLFGSYLYYTAW
NTQKVFKVLINSDGTGTVVDWMSDVPELGRLDSIEIEPGNSQPKSAACMQNNGGCSTFCL
PTPTGRACACEEGVDLMADGETCEVTGGVSCSGDVPNGAWSPTCHQLPTETCTYTCNENF
LPNQANPTVTCGREGEWSIPPKFLCLEKTCPLMYPVHHLLNDCRPTVESECEYACSDNFT
KNANVPKIKCLPSTEWSHNAFDVCKQFDVRVDTMVSKVHCKEDLPNVVLDPDCNRLKDSV
CTFSCKEGYQKKDEDIVELICMSNGKWNFGHIPLCVGPSRSQTAKLSQGEGKSDSSYTAI
AATLAAVIAVVFIVVLVGVFFYCRRKRTGVVGRYESHQNEANVYCEPQKGIVNIAAEPGN
STENNHYAHMSDI
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacaagagtgttttgtctgtgttgattttttgctggatctttagttttatccca
gcagaaaatattacagacacgtcgggaataggaatcgttgtttcactctttagtcctgga
cacctttcattgatcgccggaaatccaaacaatatgaatatgagttcgatgagttctggg
aaaggaatgcttcccatacaaacatactacttcaacacacctcgtgccaaaattgtcagc
atggcttcagacccgaggaaaaatgctttgttcatcttagactccgattcccacagtatc
tatagaatggagaattttaatatttgggtaaacgatagtttgactatagttccaattcaa
aaaggtgtgtcaaaaacgtctgcacaaatcacatacgattggttaaacgaaatggtgtat
tgggtagatggttactacaattggatagggatgcaacccgcctacaccacggataatagt
ctatataaaataattatccaccagggactgggcagacctgaaggaatcgcagtggaccca
attagtggatacctcttttactccgatatgggaaaaccgcaaagaattgagagatcctct
ttgattggcaaagatagaaaatccattattacgtcaggtgttgaccgtgtatatgacatc
acagtggaccacaaggagcagactctgtactgggtggacgcgggaagacatactctggag
tcagccgactttaacggaagaaacagacgactattgaccaggatgaactctgtaaagttc
acgtcagttgtcgtattcggtgattttctgtatgtgacgtcatttacgagcaacaccgtc
accaagataagtaagagaaccggagaaatcaatcttatagtcgtggtggatgatgggata
cctgtgggagccgaaatatgggatccaacaaatactagcccagtatcaaaggtttgctca
agttatggttgtgcccatatgtgtgttcatttgccaagcggacccaagtgtgtttgcaag
gaagggtatacactggcagaaaacaacaaagcgtgtgtcaatgagaaccttcagaaaggt
ctgattgtggccaatagtactcatgtctgtaacatggacatccgccatatcaccgctcta
aaagacgaaatgacgtgtagagtggctaacctcactggtataatgttcatggcgatagat
atagcatcacagtggctgttttatgttgattctgacaatcatgcactgatgcagtattcc
ttgatttttaacgctaccacacccattaccgaagctggtccaaatgtaacaggttttgcc
tacgactggctcgacaacaatatattgtggtcagaatcggacattctgcagaaaggttct
atccgcattttttcaatggataaatatgctcacacagatctttatgcaaatctggacaac
cctacttacgtgaatgttaacccattggacagagaagtgtactggatagagggcaaggga
aacaactacacgataaaagttggaaccttagacggaagttcagctaaggtgatcgtcaac
agtggggatctaaagaagcctaccggtttattctaccacatagagaaacatagactgttt
tggataaattgggatagcatatacagttgcaaaacagacggctcggacctgaccacgcat
ttgaattccatttccgttttgttcttcggggttgaactaatggtttacaaggaccacgct
atttggactcatggaaagtctttcattatgtcgggaagcattttccgaaacaacgcagag
gttaaaatcgatacaagccactatggtaaaattactggaatggcaatatacgatccagat
ctacagagatacaaaagaggaccttgtgaaataatgaacggtggatgtgaacatgtttgt
ttgccatctgcaaccgcccaagctacctgtaaatgtgattttggattcatattggaatct
gatcgcaaaaactgttcatcggacgccctgagagaccggttcatgataatagcggaccac
acacacggcagactataccaggcatctttattggatgcaagaatcaccgctctggacttt
ccggaagtatcaaaaccggcttgtgttttatacaacaggaatactaaaatggtgtattgg
gtcgaaatagagagtcagggcagtcagataaagcaggcaaccattgacggcaaaaatacc
aagactctgatggaagccggaagtgtgtaccccgatagaattgctatggactttactaca
ggacatatatatttcactgcggtagccagtgaattgtacgagagttacgtaggaatactt
catcctcagaaatcagtccacaaaaagttaattacccagctcggtacgcctcgtgcaatt
gctgtacatccttctgcaggttacatgttctggactgaccataacaaaaacagtccccat
attgggcgagcattcatggatggttcatctcaaagagttttactttcaaaagatgtggta
tggccaaacggccttgctatagactaccaagaaaatcggttatactgggcggatggtcat
caagataagatagagtcaatagacatatacggtctcaatagaaaagaggtcctcaaagtc
acaaatcagcaacttgtggacatagatttgtttggatcgtatctctattacacggcatgg
aatacgcagaaggtattcaaagtattgataaacagcgatgggactggaaccgttgtggac
tggatgtcggatgttccagaactaggtcgtctagactccatagaaattgagcctgggaat
agtcagcccaaaagcgctgcctgtatgcagaataatggaggatgctcaacattctgtctt
cctacccccactggccgcgcatgcgcctgtgaggaaggtgtggacttgatggcggatggt
gaaacgtgcgaagtcactggaggagtgtcttgttctggggatgttccaaacggtgcctgg
tctcccacctgtcaccagctccccacagagacgtgcacctacacgtgtaacgagaacttc
ttacctaatcaagcgaaccctactgtgacctgcgggagagagggagaatggtctattccc
cccaaatttttatgtctggagaaaacctgtccattaatgtacccagtccatcacctatta
aacgattgccgtccaactgttgagagtgagtgcgaatacgcgtgcagtgataacttcaca
aagaatgccaatgtaccgaagattaaatgtttaccgtccacagaatggagccacaatgct
tttgatgtttgtaaacagtttgatgttcgagtggatacaatggtatctaaagtccactgc
aaggaggaccttcccaatgttgtacttgatccagactgcaataggctgaaagacagcgta
tgcactttctcttgcaaagaaggctaccagaaaaaggacgaagatattgttgagctcatt
tgtatgtctaatggaaagtggaactttggtcacattccactgtgcgttggtccttctagg
tcacagaccgctaagttgtcccagggggaggggaagtcggactcctcctacacggccatc
gctgccaccctcgccgctgtgattgcagtggtctttatcgttgtactcgttggtgtcttc
ttttactgtcgacgaaagagaactggcgtggttggtagatacgaatctcaccaaaacgag
gccaatgtgtactgtgagccccagaaaggcatagtcaacattgccgccgaacccggaaac
agcacagaaaataaccattacgctcacatgagtgatatatga
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