Magallana gigas (Pacific oyster): 105317478
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Entry
105317478 CDS
T03920
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03030
DNA replication
crg03410
Base excision repair
crg03420
Nucleotide excision repair
crg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105317478
03410 Base excision repair
105317478
03420 Nucleotide excision repair
105317478
03430 Mismatch repair
105317478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crg03032
]
105317478
03036 Chromosome and associated proteins [BR:
crg03036
]
105317478
03400 DNA repair and recombination proteins [BR:
crg03400
]
105317478
DNA replication proteins [BR:
crg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
105317478
DNA Replication Termination Factors
ELG1-RFC complex
105317478
Chromosome and associated proteins [BR:
crg03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
105317478
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
105317478
Check point factors
HRAD17(Rad24)-RFC complex
105317478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
Rad17
AAA_22
nSTAND_NTPase5
AAA_lid_RFC1
AAA_14
AAA_16
Viral_helicase1
AAA_11
Mg_chelatase
nSTAND3
AAA_assoc_2
RuvB_N
AAA_5
AAA_25
AAA_19
DNAX_ATPase_lid
ABC_tran
AAA_24
AAA_18
AAA_28
AMP-binding_C_3
AAA_30
SLFN-g3_helicase
MipZ
MeaB
RNA_helicase
AAA_23
NTPase_1
TTI1
Motif
Other DBs
NCBI-GeneID:
105317478
NCBI-ProteinID:
XP_011412426
UniProt:
K1QGP1
LinkDB
All DBs
Position
3:24363204..24366502
Genome browser
AA seq
344 aa
AA seq
DB search
MADQEMEIDETPVATKSSGNPHHEQPWVEKYRPVKLHDIVGNEETISRLEVFGRDGNVPN
VIIAGPPGTGKTTSILCLARAMLGPSYRDAVLEMNASNDRGIDVVRNKIKMFAQQKVTLP
KGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYS
KLTDAQVLKRLLEVCEAEAVSYTDDGLEAIVFTAQGDMRQALNNLQSTFQGFGHVNSENV
FKVCDEPHPMLIQDMLQHCVNGNVEEAYKTMAHLWKLGYSADDIITIIFRVCKNQKIPEF
LKLEFIKEIGYTHMRIAEGVQSLLQMSALLARLCKKSAVPGIKG
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcaagaaatggaaatcgacgaaaccccagttgcaacaaagtccagtggtaat
cctcaccacgaacaaccatgggttgaaaagtacaggcctgtgaaacttcatgatatagtt
ggaaacgaagaaactattagccgtcttgaagtctttggacgagatggaaatgttcctaat
gttataattgcgggtccaccaggtactggtaaaaccaccagtatactgtgtttagccaga
gctatgcttggtccctcctatagagacgctgtccttgaaatgaatgcatctaatgacaga
ggtatagatgttgtaaggaacaaaattaaaatgtttgcacaacaaaaagttactctgcca
aaaggaagacataagattataattctagatgaagcagacagtatgacagatggagctcag
caagccctgagaagaacaatggaaatctactccaaaacaacaaggttcgccttagcctgc
aatgcatcagacaaaataattgaacctatccagtctcggtgtgccgtcctgcgatattct
aagctgactgacgcccaggtgttgaagcggttactggaagtgtgtgaggccgaggcggtc
agctacacagatgacggtctagaggccattgtgttcacagcccaaggagacatgcgacag
gctctaaacaacttgcagtccacatttcaaggttttggtcatgtcaacagtgaaaatgtc
ttcaaggtttgtgatgagccccatccaatgcttattcaagacatgctacagcactgtgtg
aatggcaatgtggaggaagcttacaaaaccatggctcacctctggaagctaggctattca
gcagacgacatcatcaccattatctttagggtgtgcaagaaccaaaaaatcccagaattc
ctcaaactggaattcatcaaggaaataggatatactcacatgagaattgctgaaggggtt
caatcattattacaaatgtcagctttgctggcgagactgtgtaaaaaatcggcagtgcca
ggtatcaaaggataa
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