KEGG   Magallana gigas (Pacific oyster): 105317478
Entry
105317478         CDS       T03920                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
crg  Magallana gigas (Pacific oyster)
Pathway
crg03030  DNA replication
crg03410  Base excision repair
crg03420  Nucleotide excision repair
crg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    105317478
   03410 Base excision repair
    105317478
   03420 Nucleotide excision repair
    105317478
   03430 Mismatch repair
    105317478
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:crg03032]
    105317478
   03036 Chromosome and associated proteins [BR:crg03036]
    105317478
   03400 DNA repair and recombination proteins [BR:crg03400]
    105317478
DNA replication proteins [BR:crg03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    105317478
  DNA Replication Termination Factors
   ELG1-RFC complex
    105317478
Chromosome and associated proteins [BR:crg03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    105317478
DNA repair and recombination proteins [BR:crg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     105317478
  Check point factors
   HRAD17(Rad24)-RFC complex
    105317478
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid Rad17 AAA_22 nSTAND_NTPase5 AAA_lid_RFC1 AAA_14 AAA_16 Viral_helicase1 AAA_11 Mg_chelatase nSTAND3 AAA_assoc_2 RuvB_N AAA_5 AAA_25 AAA_19 DNAX_ATPase_lid ABC_tran AAA_24 AAA_18 AAA_28 AMP-binding_C_3 AAA_30 SLFN-g3_helicase MipZ MeaB RNA_helicase AAA_23 NTPase_1 TTI1
Other DBs
NCBI-GeneID: 105317478
NCBI-ProteinID: XP_011412426
UniProt: K1QGP1
LinkDB
Position
3:24363204..24366502
AA seq 344 aa
MADQEMEIDETPVATKSSGNPHHEQPWVEKYRPVKLHDIVGNEETISRLEVFGRDGNVPN
VIIAGPPGTGKTTSILCLARAMLGPSYRDAVLEMNASNDRGIDVVRNKIKMFAQQKVTLP
KGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYS
KLTDAQVLKRLLEVCEAEAVSYTDDGLEAIVFTAQGDMRQALNNLQSTFQGFGHVNSENV
FKVCDEPHPMLIQDMLQHCVNGNVEEAYKTMAHLWKLGYSADDIITIIFRVCKNQKIPEF
LKLEFIKEIGYTHMRIAEGVQSLLQMSALLARLCKKSAVPGIKG
NT seq 1035 nt   +upstreamnt  +downstreamnt
atggctgatcaagaaatggaaatcgacgaaaccccagttgcaacaaagtccagtggtaat
cctcaccacgaacaaccatgggttgaaaagtacaggcctgtgaaacttcatgatatagtt
ggaaacgaagaaactattagccgtcttgaagtctttggacgagatggaaatgttcctaat
gttataattgcgggtccaccaggtactggtaaaaccaccagtatactgtgtttagccaga
gctatgcttggtccctcctatagagacgctgtccttgaaatgaatgcatctaatgacaga
ggtatagatgttgtaaggaacaaaattaaaatgtttgcacaacaaaaagttactctgcca
aaaggaagacataagattataattctagatgaagcagacagtatgacagatggagctcag
caagccctgagaagaacaatggaaatctactccaaaacaacaaggttcgccttagcctgc
aatgcatcagacaaaataattgaacctatccagtctcggtgtgccgtcctgcgatattct
aagctgactgacgcccaggtgttgaagcggttactggaagtgtgtgaggccgaggcggtc
agctacacagatgacggtctagaggccattgtgttcacagcccaaggagacatgcgacag
gctctaaacaacttgcagtccacatttcaaggttttggtcatgtcaacagtgaaaatgtc
ttcaaggtttgtgatgagccccatccaatgcttattcaagacatgctacagcactgtgtg
aatggcaatgtggaggaagcttacaaaaccatggctcacctctggaagctaggctattca
gcagacgacatcatcaccattatctttagggtgtgcaagaaccaaaaaatcccagaattc
ctcaaactggaattcatcaaggaaataggatatactcacatgagaattgctgaaggggtt
caatcattattacaaatgtcagctttgctggcgagactgtgtaaaaaatcggcagtgcca
ggtatcaaaggataa

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