KEGG   Magallana gigas (Pacific oyster): 105317502
Entry
105317502         CDS       T03920                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
crg  Magallana gigas (Pacific oyster)
Pathway
crg03020  RNA polymerase
crg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    105317502
  09124 Replication and repair
   03420 Nucleotide excision repair
    105317502
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crg03021]
    105317502
   03400 DNA repair and recombination proteins [BR:crg03400]
    105317502
Transcription machinery [BR:crg03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     105317502
DNA repair and recombination proteins [BR:crg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      105317502
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4 Maelstrom
Other DBs
NCBI-GeneID: 105317502
NCBI-ProteinID: XP_011412455
LinkDB
Position
5:complement(7223861..7231632)
AA seq 146 aa
MMASGTSAQQQNVSEAPEEDAAELQFPKEFENAETLLISEVQMLLEHRKTQNESAEEEQE
LSEVFMKTLNYTSRFSKFKNRETISAIRSVLMQKKLHKFELAALANLCPDNAEEAKSLIP
SLEGRFEDEELQQLLEDIKTKRSFQY
NT seq 441 nt   +upstreamnt  +downstreamnt
atgatggcgtcgggaacatctgcacaacaacaaaacgttagtgaagcaccagaagaagat
gcggcggaactacagtttcccaaggaatttgaaaatgcggagacacttttgatatctgaa
gttcagatgctactagaacacagaaaaacacagaacgagagcgctgaggaagagcaggaa
ttgtctgaagttttcatgaaaactctgaactacaccagtcgtttctccaaattcaagaac
agggaaaccatttctgccatacgcagtgtattgatgcagaagaagctgcataagtttgag
ttagcagcacttgctaatttgtgtccagataatgcagaagaggccaagtcacttattcca
agtctagagggaagatttgaagatgaagaattacaacaactactggaagatataaagacc
aagagaagtttccagtattga

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