Magallana gigas (Pacific oyster): 105317545
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Entry
105317545 CDS
T03920
Name
(RefSeq) DENN domain-containing protein 4C isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crg04131
]
105317545
Membrane trafficking [BR:
crg04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
105317545
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
DUF2464
PPR_long
PPR
PPR_3
Motif
Other DBs
NCBI-GeneID:
105317545
NCBI-ProteinID:
XP_011412514
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All DBs
Position
LG3:complement(12835275..12861317)
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AA seq
2000 aa
AA seq
DB search
MDDRRVADYFVVAGLPDNPLPLEEFSNEAAIKPTYKQDPITDIAVIDKTLGEKVPKGYTC
IERTQFNYLADLNHGSIRCHEMFLCYKRGRDKPPLTDVGVLYEGKERLMSECEIVHTTPW
GSPANVNNGSNGRIYITFRRARETAASDTLAVVDVVIVLQNKNEVAPHAYHKIEKNLNRG
MVGSDVFVCYKKAMVKADILAYKPGLIQRYPEEDYENFPLPPEVPQFCLPMGSSIECWSA
KAQHPLPVFSTFVLTLANNEKVYGAAVTFYEEFEEEKLTDLQMRHLGLKNKHIREQYRIL
KTVHSNKSICLLSHWPFFDAFRKFLTYLYRISITGPHPVPIERHISHFMFDVPYPSPQRP
RILVQLNHDALSLSMPEDSPLPQSGASYVTMLKNMGPENCMSLLLYSLLEYKILVHSLRP
AVLTGVVEAVAGMIFPLHWQCAYIPLCPLGLSDMLSAPVPYIVGIDSRYFDLYDPPPEVV
CVDLDTVTISLPEDKKGVNYRSLPKKPARVLQDTLHKLFDELSTRHGLGHNIDEINLEMG
SFDTDFKKKRKEDLSLVFERKTLLELSIQEALLRFMACLLKGYKNFLKPITKAPTESTTD
PASLFDIQGFLRSRDKSNLKFFQQMVKTQTFISFISERSFVSDKDASIAFFDECMEKVDE
TKDEPKLIDIDESQNSERTVFIMPPDPTGLPEGKTYSYNGFPELRSELFLRKQISNVSLN
EKPAKSMHEPLSRRTKQEIRSAQKMALQFANDPQLWAKCLLSHCYSLWFIHLPAYIEQSK
ALNKCMKEAYDVLQKMQLAKLQPPDEMCYRVMLQLCCLYNQPVMAVKVLYQMKRANVQPN
AITYGFYNKAVFEGTWPSTRSNASILWRKLRNVIIGAAQFRRRLRRRSMSLNSNSGSDYD
RVSRTSIDSFLEDQSEHRSTGIMVKSDIFSDSSQISTASKGTMSSSTTTAKDESNSTGGV
SDKGYNSMSREELKSLTHQPSSGEIDSEQQKANKEKTSLRFTLPSTHKGKEKKEVNGENP
EITFSEVEPDFRNRVGSIVRKSLGSVSSSGSHETLKGSMMTSSQAGLLMLSQNSLDATSF
PQDVNLQSSLNAGDNKRKRHRSAGDYHTKTSRSNSVFNNWRPRHISGDPSCIGRTPKEIL
LDDDIFVEENVISRGNLEGINETVDSGVIVEDPQGGALHSDRPQGLDLNHSADPEDSGTQ
PCDIPQRKSLLDGLGNVVHSVGTPVTENDPLGLFNEDDPGEEGQGEEKVVMRRKNIQTQP
FKSERLNYGRHSANFDADIHPEATLLVDPEDPDVVYSVREIDPSEAGIQCNIPDEQKASF
RIGSGLSLDDSLSTEYFGGGPRPLSQMEKIGKRLKMGRTQSTPDNLDEQDRTSKSGLSAV
TNYLKSFQSPTKKSQDSLDEAGGTPSESRFRRLGSFRKGERLSGAFKSAAGALMSKVNEI
KQTISTPVKYGSSQSLGRSSDNLDVDEKRGRDMPGRSLDHHRKHRNPLEEFDNLHPYPNS
SLPSSSFMEQYVPLKEFGENKSVTFASLENTLQNIAMEIEISSCFRCNRCRALLYDEEIM
AGWSADDSNLNTTCIFCQNKLVPKLQIYVKDWRGGNVSSVEGSKDDDTDKQSSTTDTDAH
SSHSNHDPWVLQDKINSISSLDNSNNDLFFGEEHLEGEGPLNVLESPERAKRDSHLAKAA
VSNTASSRSSSSIDLEGIALNSRRRCASECFTNSTDNMMYGSSFDSVEDYGGYLSSPIRI
SIGEDVELPTGPDPTPEMKKDFMERCTTSVDPITVPYLSPLVLRKELDNILANEGDLSLG
SDEFLDQHPIIFWNLVWYFKRLEVPSHVPGFLLTAKSINGEEGNVGVYSSKHVLIRPMWD
NVRIHEEVGLPMYRSWNEGRSSHMVDALITEAQPFNKAILHQIIESIMCNDLLTPIKLVM
NCRRRLRLRKSRHRSMYRDIVFLAFMACGKENIDNDAFDREYRQAFNKLSHMEIKRTQRD
DRPRKTRIIWCRKVFGELEV
NT seq
6003 nt
NT seq
+upstream
nt +downstream
nt
atggatgacaggcgagttgcggactactttgtggtggcagggttgccagacaaccccctc
cccttggaggagttctccaatgaagcggcaatcaaaccaacatacaaacaagaccccatc
acagacattgccgtcatcgacaagaccctgggagaaaaagtcccgaagggctacacctgt
atcgagaggacacaatttaactaccttgcagacctgaatcatggcagcatcaggtgccac
gagatgttcctgtgttacaagcgggggagggacaaacctccgctcactgacgtgggggta
ctttatgaggggaaagagagattgatgtctgaatgtgaaattgtacacaccacaccctgg
gggagcccggctaatgtgaataacggtagcaatgggaggatctatataacgtttcggcgg
gcacgggaaacagcagccagtgataccctggcagtagttgatgttgtcattgtactgcaa
aataagaatgaagtcgctcctcatgcctatcacaaaatagagaaaaacttaaacagagga
atggtgggctctgatgtatttgtgtgttacaagaaggccatggtgaaggcagacattcta
gcctacaagcctggattgatacaaagataccctgaggaagattatgagaattttcccctg
ccccctgaggtgccccagttctgtctccccatgggatcctcaatagagtgttggtcagcc
aaagcccagcatcctctccccgtcttctccacatttgtactaacactggctaataatgag
aaggtttatggtgctgctgtcacattttacgaggaatttgaggaagagaaactgacagat
ttacaaatgagacatttaggactgaaaaataaacatattcgagaacagtatcggattctt
aaaactgtacattccaataagagtatctgtcttctttcccactggccgttctttgatgcc
ttcaggaagttcctgacttacctgtaccgtatatctataactggtccccatcccgtcccc
attgaaagacatatatctcacttcatgtttgatgttccgtacccatctcctcaaaggccg
aggattcttgtgcagttaaatcatgatgccctctctttgtccatgccagaagattctcca
ttaccccagagtggagcgtcgtacgtgacgatgctgaagaacatgggtcctgagaactgc
atgagtttactgctgtacagtctgctggagtacaagatactggtccactcactgcgtccc
gcggtgctgaccggggtcgtggaggccgtggctgggatgatcttccccctacactggcag
tgtgcatacattcctctctgtcccttgggactctctgatatgttgtcagccccggtgcca
tacattgtaggtattgactcgagatactttgacctgtatgacccgccccctgaagtggtg
tgtgttgatctggacacggtcaccatcagtctcccggaagataaaaaaggtgtaaactat
aggagcttgccaaagaagccagcccgagtcctacaagacactctacacaagctgtttgac
gaattgtccaccagacacggccttggtcacaacatcgacgagatcaaccttgagatgggc
tcgtttgatactgacttcaagaaaaagagaaaggaggacctttctttggtctttgaaaga
aagaccctgctggagctgtccattcaggaagcgttgctgaggttcatggcgtgtctgctg
aagggctacaagaacttcctcaaacccatcaccaaggcccccacagagtcaaccaccgac
cccgcctcactctttgatattcaagggtttttgagaagcagagacaagtccaacttgaag
tttttccaacagatggtaaagactcagactttcatcagttttatctcagagagatccttt
gtctctgacaaagatgccagcatcgctttctttgatgagtgcatggaaaaggtggatgag
acaaaagatgaacccaagttgatagacattgatgaatctcagaacagtgagagaacagta
tttataatgcctcctgacccaacagggttacctgaggggaaaacatacagttacaatggt
ttccctgagttgcggtcagagttgttcctcagaaagcagatctctaatgtttctttgaat
gagaaacctgctaaaagtatgcatgagccactgtctcgaagaacaaagcaggaaataaga
tcagctcagaagatggctcttcagtttgcaaatgatcctcaactctgggccaagtgcttg
ttgagtcactgctacagcctgtggtttatccacctgccagcgtacattgaacagtccaag
gccctcaacaaatgtatgaaggaggcctacgacgtcctacagaagatgcagctggcaaaa
ttacagcctcctgatgagatgtgttatcgtgtgatgcttcagttgtgttgtctctacaac
cagcctgtcatggctgtcaaagtcttgtatcagatgaagagggccaatgtccaacccaac
gccatcacctatggcttctacaacaaggcagtgtttgaaggaacttggccttccaccaga
agtaacgcctccatcttgtggagaaaactcagaaacgtcatcattggagcggctcagttc
cggaggagacttcgccggcgaagcatgtcccttaactccaactccggcagcgactacgat
cgtgtgagtcgcaccagcatcgacagtttcctggaggatcagtcagagcacaggagtaca
gggattatggtgaaatcggacatcttcagtgattctagtcagatcagcacggccagtaaa
ggaaccatgtcctcctccactacaaccgccaaggacgagagcaacagcacgggtggtgta
tccgacaagggctataactcaatgtcccgagaggaactgaaatccctcactcatcaacct
tccagtggagaaattgactcagaacagcaaaaagccaacaaagagaagactagcctgagg
tttacactgcccagtacacataagggcaaagagaagaaggaagttaatggagaaaatcca
gaaatcacattcagtgaggtcgagcctgactttaggaatcgggtgggcagtatcgtcagg
aagtcactgggtagcgtgagcagttcaggcagtcacgaaaccctcaaaggaagtatgatg
acaagctcacaagcagggctgctgatgttgagtcagaactctctggatgccacatcgttt
ccacaggatgttaatctccagtccagtctaaatgcaggtgacaacaaacggaaacgccac
agaagtgctggagactaccacaccaagacctcacggtccaacagtgtgttcaacaactgg
cgtccgcgacacatcagtggtgaccccagctgtataggaaggactcctaaggagattctg
ttggatgatgatatttttgtggaggagaatgtaatttccagggggaatctggagggaatt
aatgagacagtagacagtggtgtgattgtggaggatccacagggtggagctctccacagt
gatagaccacagggactggatctaaatcattccgctgatccggaggattcaggcacccag
ccttgtgatattcctcagaggaagagcttattggatggattaggtaatgttgtacattcc
gttggaactccggttacagagaatgatcctctggggttatttaatgaagatgatcctggt
gaggaaggacagggagaggagaaagtggtcatgaggcggaaaaacattcagactcagcct
tttaaatcagagaggctaaattatggaagacatagtgctaattttgatgcggatattcac
ccagaagcgactcttctggtcgatccggaggatccagatgtggtgtatagtgttagagaa
atagacccgagtgaagcagggattcagtgcaatattccagatgagcagaaggcttcgttc
aggattggatcaggattaagtctggatgactccttatccactgagtattttggaggagga
ccaagacctttatctcaaatggaaaaaattggaaaaaggttaaaaatgggaagaacacag
agcactccagataatctggatgaacaagatcggacaagtaaatctggattaagtgctgtg
acaaattatctcaagtcttttcagtcgcctacaaaaaaatcccaggactcattagatgaa
gcaggtggtacaccatcggaatccagattcagaagacttgggagttttcggaaaggagaa
cggttaagtggtgcttttaaatcagcagcaggtgctctgatgagtaaagtgaatgaaata
aaacagacaatttctacccccgtaaagtatggctcctctcagtccctggggaggtccagt
gataacctggatgtagatgagaaaagagggagagatatgccgggaagatctctggatcat
cacaggaaacacagaaatccgctcgaagaatttgataacttacatccttatcctaatagt
agtttaccatcttcctcttttatggagcagtatgtccctctcaaggaatttggtgaaaac
aagtctgttacttttgcaagtttagaaaatacattacaaaacatcgccatggagattgaa
attagcagctgtttccgttgcaatagatgtagagctcttttgtatgatgaggaaataatg
gctggatggtctgctgatgattcaaatcttaacacaacctgtatattctgccagaataaa
cttgtgccaaaactacaaatctatgtgaaggattggcgtggtgggaatgtgtcctcggtt
gagggcagcaaggacgacgacacggacaaacagtcctctacaactgacactgacgcacac
tctagtcactcaaaccacgacccctgggtcctccaggataaaatcaactccatctctagt
ctagacaactccaacaatgacctcttctttggggaggagcatctagagggggaggggcca
ctcaatgtgttggagtcccccgagagggccaagcgggacagtcacctagccaaggcggct
gtgtccaataccgccagctcccggtcctcaagttccatagatttggagggtatagccctg
aactctcggcgacgctgtgccagtgagtgcttcactaactccacagacaacatgatgtac
gggtcgtcgtttgactcggtggaggattatgggggttatttgtcttctcctattcgtatt
tctattggagaagatgtagaattacctacaggtccagaccccacaccagaaatgaagaaa
gacttcatggagcgctgtacaacctctgtggatcctatcaccgtcccatacttatctccc
ctggtcctccggaaggagctggataacatcctggccaatgaaggagacctctccctgggc
tcggacgagttcctggaccagcatccgatcatattctggaacctggtgtggtacttcaag
agattggaggtccctagtcatgtccctggtttcttactgaccgccaagtccatcaatggc
gaggagggcaatgttggcgtatacagcagtaagcatgttttgatacgtccaatgtgggat
aacgtccgcatccatgaagaagtgggcctgcctatgtacaggtcatggaatgaaggtcga
agttctcacatggtcgatgcactgattacagaggcgcaacctttcaataaagcaatttta
catcaaattattgagagcatcatgtgtaatgaccttttgacccctataaaactggtgatg
aactgtcgtcgaaggctgcgtctaaggaagagtcgacacaggagcatgtaccgagacatc
gttttcctggcctttatggcctgtggcaaggagaatattgataatgatgctttcgatcgt
gaatacagacaagcattcaacaagctgtcacacatggaaatcaagcgaacacagagagac
gacagacctcgcaaaaccagaatcatttggtgtcgaaaagtgtttggggaattagaagtg
tag
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integrated database retrieval system
