Magallana gigas (Pacific oyster): 105317545
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Entry
105317545 CDS
T03920
Name
(RefSeq) C-myc promoter-binding protein isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crg04131
]
105317545
Membrane trafficking [BR:
crg04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
105317545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_long
DUF2464
PPR
PPR_3
Motif
Other DBs
NCBI-GeneID:
105317545
NCBI-ProteinID:
XP_011412514
LinkDB
All DBs
Position
6:44956330..44982776
Genome browser
AA seq
1999 aa
AA seq
DB search
MDDRRVADYFVVAGLPDNPLPLEEFSNEAAIKPTYKQDSITDIAVIDKTLGEKVPKGYTC
IERTQFNYLADLNHGSIRCHEMFLCYKRGRDKPPLTDVGVLYEGKERLMSECEIVHTTPW
GSPANVNNGSNGRIYITFRRARETAASDTLAVVDVVIVLQNKNEVAPHAYHKIEKNLNRG
MVGSDVFVCYKKAMVKADILAYKPGLIQRYPEEDYENFPLPPEVPQFCLPMGSSIECWSA
KAQHPLPVFSTFVLTLANNEKVYGAAVTFYEEFEEEKLTDLQMRHLGLKNKHIREQYRIL
KTVHSNKSICLLSHWPFFDAFRKFLTYLYRISITGPHPVPIERHISHFMFDVPYPSPQRP
RILVQLNHDALSLSMPEDSPLPQSGASYVTMLKNMGPENCMSLLLYSLLEYKILVHSLRP
AVLTGVVEAVAGMIFPLHWQCAYIPLCPLGLSDMLSAPVPYIVGIDSRYFDLYDPPPEVV
CVDLDTVTISLPEDKKGVNYRSLPKKPARVLQDTLHKLFDELSTRHGLGHNIDEINLEMG
SFDTDFKKKRKEDLSLVFERKTLLELSIQEALLRFMACLLKGYKNFLKPITKAPTESTTD
PASLFDIQGFLRSRDKSNLKFFQQMVKTQTFISFISERSFVSDKDASIAFFDECMEKVDE
TKDEPKLIDIDESQNSERTVFIMPPDPTGLPEGKTYSYNGFPELRSELFLRKQISNVSLN
EKPAKSMHEPLSRRTKQEIRSAQKMALQFANDPQLWAKCLLSHCYSLWFIHLPAYIEQSK
ALNKCMKEAYDVLQKMQLAKLQPPDEMCYRVMLQLCCLYNQPVMAVKVLYQMKRANVQPN
AITYGFYNKAVFEGTWPSTRSNASILWRKLRNVIIGAAQFRRRLRRRSMSLNSNSGSDYD
RVSRTSIDSFLEEQSEHRSTGIMVKSDIFSDSSQISTASKGTMSSSTTTAKDESSSTGGV
SDKGYNSMSREELKSLTHQPSSGETDSEQQKANKEKTSLRFTLPSTHKGKEKKEVNGGNP
EITFSEVEPDFRNRVGSIVRKSMGSVSSSGSHETLKGSMMTSSQAGLLMLSQNSLDSTSF
PQDVNLQSSLNAGDNKRKRHRSAGDYHTKTSRSNSVFNNWRPRHISGDPSCIGRTPKEIL
LDDDIFVEENVISRGNLEGINETVDSGVIVEDPQGGALHSDRPQGLDLNHSADLEDSGTQ
PCDIPQRKSLLDGLGNVVHSVGTPVTENDPLGLFNEDDPGEEGQGEEKVVMRRKNIQTQP
FKSERLNYGRHSANFDADIHPEATLLVDPEDPDVVYSVREIDPSEAGIQCNIPDEQKASF
RIGSGLSLDDSLSTEYFGGGPRPLSQMEKIGKRLMGRTQSTPDNLDEQDRTSKSGLSAVT
NYLKSFQSPTKKSQDSLDEAGGTPSESRFRRLGSFRKGERLSGAFKSAAGALMSKVNEIK
QTISTPVKYGSSHSLGRSSDNLDVDERRGRDMPGRSLDHHRKHRNPLEEFDNLHPYPNSS
LPSSSFMEQYVPLKEFGENKSVTFASLENTLQNIAMEIEISSCFRCNRCRALLYDEEIMA
GWSADDSNLNTTCIFCQNKLVPKLQIYVKDWRGGNVSSVEGSKDDDTDKQSSTTDTDAHS
SHSNHDPWVLQDKINSVSSLDNSNNDLFFGEEHLEGEGPLNVLESPERAKRDSHLAKAAV
SNTASSRSSSSIDLEGIALNSRRRCASECFTNSTDNMMYGSSFDSVEDYGGYLSSPIRIS
IGEDVELPTGPDPTPEMKKDFMERCTTSVDPITVPYLSPLVLRKELDNILANEGDLSLGS
DEFLDQHPIIFWNLVWYFKRLEVPSHVPGFLLTAKSINGEEGNVGVYSSKHVLIRPMWDN
VRIHEEVGLPMYRSWNEGRSSHMVDALITEAQPFNKAILHQIIESIMCNDLLTPIKLVMN
CRRRLRLRKSRHRSMYRDIVFLAFMACGKENIDNDAFDREYRQAFNKLSHMEIKRTQRDD
RPRKTRIIWCRKVFGELEV
NT seq
6000 nt
NT seq
+upstream
nt +downstream
nt
atggatgacaggcgagttgcagactactttgtggtggcagggttgccagacaaccccctc
cccttggaggagttctccaatgaagcggcaatcaaaccaacatacaaacaagactccatc
acagacattgccgtcatcgacaagaccctgggagaaaaagtccccaagggctacacctgt
atcgagaggacacaatttaactaccttgcagacctgaatcatggcagcatcaggtgccac
gagatgttcctgtgttacaagcgggggagggacaaacctccgctcactgacgtgggggta
ctttatgaggggaaagagagattgatgtctgaatgtgaaattgtacacaccacaccctgg
gggagcccggccaatgtgaataacggtagcaatgggaggatctatataacgtttcggcgg
gcacgggaaacagcagccagtgataccctggcagtagttgatgttgtcattgtactgcaa
aataagaatgaagtcgctcctcatgcctatcacaaaatagagaaaaacttaaacagagga
atggtgggctctgatgtatttgtgtgttacaagaaggccatggtgaaggcagacattctt
gcctacaagcctggattgatacaaagataccctgaggaagattatgagaattttcccctg
ccccctgaggtgccccagttctgtctccccatgggatcctcaatagagtgttggtcagct
aaagcccagcatcctctccccgtcttctccacatttgtactaacactggctaataatgag
aaggtttatggtgctgctgtcacattttacgaggaatttgaagaagagaaactgacagat
ttacaaatgagacatttaggactgaaaaataaacatattcgagaacagtatcggattctt
aaaactgtacattccaataagagtatctgtcttctttcccactggccgttctttgatgcc
ttcaggaagttcctgacttacctgtaccgtatatctataactggtccccatcccgtcccc
attgaaagacatatatctcacttcatgtttgatgttccatacccatctcctcaaaggccg
aggattcttgtgcagttaaatcatgatgccctttctttgtccatgccagaagattctcca
ttaccccaaagtggagcgtcgtacgtgacgatgctgaagaacatgggtcctgagaactgc
atgagtttactgctgtacagtctgctggagtacaagatactggtccactcactgcgaccc
gcagtgctgaccggggtcgtggaggccgtggctgggatgatcttcccccttcactggcag
tgtgcatacattcctctctgtcccttgggactctctgatatgttgtcagccccggtgcca
tacattgtaggtattgactcgagatactttgacctgtatgacccgccccctgaagtggtg
tgtgttgatttggacacggtcaccatcagtctcccggaagataaaaaaggtgtaaactat
aggagcttgccgaagaagccagcccgagtcctacaagacactctacacaagctatttgat
gaactgtccaccagacacggcctgggtcacaacatcgacgagatcaaccttgagatgggc
tcgtttgataccgacttcaagaaaaagagaaaggaggacctttctttggtctttgaaaga
aagaccctgctggagctgtccattcaggaagcgttgctgaggttcatggcgtgtctgctg
aagggctacaagaacttcctcaaacccatcaccaaggcccccacagagtcaaccaccgac
cccgcctcactctttgatattcaagggtttttgagaagcagagacaagtccaacttgaag
tttttccaacagatggtaaagactcagactttcatcagttttatctcagagagatccttt
gtctcggacaaagatgccagcatcgctttctttgatgagtgcatggaaaaggtggatgag
acaaaagatgaacccaagttgatagacattgatgaatctcagaacagtgagagaacagta
tttataatgcctccggacccaacagggttacctgaggggaaaacatacagttacaatggt
ttccctgagttgcggtcagagttgttcctcagaaagcagatctctaatgtttctttgaat
gagaaacctgctaaaagtatgcatgagccactgtctcgaagaacaaagcaggaaattaga
tcggctcaaaagatggctcttcagtttgcaaatgatcctcaactctgggccaagtgcttg
ttgagtcactgctacagcctgtggtttatccacctgccagcgtacattgaacagtccaag
gcactcaacaaatgtatgaaggaggcctacgacgtcctacagaagatgcagctggcaaaa
ttacagcctcctgatgagatgtgttatcgtgtgatgcttcagttgtgttgtctctacaac
cagcctgtcatggctgtcaaagtcttgtatcagatgaagagggccaatgtccaacccaac
gccatcacctatggcttctacaacaaggcagtgtttgaaggaacttggccttccaccaga
agtaacgcctccatcttgtggagaaaactcagaaacgtcatcattggagcagctcagttc
cggagaagacttcgccggcgaagcatgtcccttaactccaactccggcagcgactacgac
cgtgtgagtcgcaccagcatcgacagtttcctggaggaacagtcggagcacaggagtaca
gggataatggtgaaatcggacatcttcagtgattctagtcagatcagcacggccagtaaa
ggaaccatgtcctcctccactacgaccgccaaggacgagagcagtagtacaggtggtgta
tccgacaagggctataactcaatgtccagagaggaactgaaatccctcactcatcaacct
tccagtggagaaacagactcagaacagcaaaaagccaacaaagagaagactagtctacgg
tttacactgcccagtacgcacaagggcaaagagaagaaggaagttaatggaggaaatcca
gaaatcacattcagtgaggtcgagcctgactttaggaatcgggtgggcagtatcgtcagg
aagtcaatgggcagcgtgagcagctcaggtagccacgaaaccctcaaaggaagtatgatg
acaagctcacaagcagggctgctgatgttgagtcagaactctctggattccacatcgttt
ccacaggatgttaatctccagtccagtctaaatgcaggtgacaacaaacggaaacgccac
aggagtgctggagactaccacaccaagacctcgcggtccaacagtgtgttcaacaactgg
cgtccgcgacacatcagtggtgaccccagctgtataggaaggactcctaaggagattctg
ttggatgacgatattttcgtggaggagaatgtaatttccagggggaatctggagggaatt
aatgagacagtagacagtggtgtgattgtggaggatccacagggtggagctctccacagt
gatagaccacagggactggatctaaatcattccgcggatctggaggattcaggcacccag
ccttgtgatattcctcagaggaagagcttattggatggattaggtaatgttgtacattcc
gttggaactccggttacagagaatgatcctctggggttatttaatgaagatgatcctggt
gaggaaggacagggagaggagaaagtggtcatgaggcggaaaaacattcagactcagcct
tttaaatcagagaggctaaattatggaagacatagtgctaattttgatgcggatattcac
ccagaagcgactcttctggtggatccggaggatccagatgtggtgtatagtgttagagaa
atagacccgagtgaagcagggattcagtgcaatattccagatgagcagaaggcttcgttc
aggattggatcaggattaagtctggatgactccttatccactgagtattttggaggagga
ccaagacctttatctcaaatggaaaaaattggaaaaaggttaatgggaagaacacagagc
actccagataatctggatgaacaagatcggacaagtaaatctggattaagtgctgtgaca
aattatctcaagtcttttcagtcgcctacaaaaaaatcccaggactcattagatgaagca
ggtggtacaccatcggaatccagattcagaagacttgggagttttcggaaaggagaacgg
ttaagtggtgcttttaaatcagcagcaggtgctctgatgagtaaagtgaatgaaataaaa
cagacaatttctacccccgtaaagtatggctcctctcactccctggggaggtccagtgat
aacctggatgtagacgagagaagagggagagatatgccgggaagatctctggatcatcac
aggaaacacagaaatccgcttgaagaatttgataacttacatccttatcctaatagtagt
ttaccatcatcctcttttatggagcagtatgttcctctcaaggaatttggtgaaaacaag
tctgttacttttgcaagtttagaaaatacattacaaaacatcgccatggagattgaaatt
agcagctgtttccgttgcaatagatgtagagctcttttgtatgatgaggaaataatggct
ggatggtctgctgatgattcaaatcttaacacaacctgtatattctgccagaataaactt
gtgccaaaactacaaatctatgtgaaggattggcgtggtgggaatgtgtcctcggttgag
ggcagcaaggacgacgacacggacaaacagtcctctacaactgatactgacgcacactct
agtcactcaaaccacgacccctgggtcctccaggataaaatcaattccgtctctagtcta
gacaactccaacaatgacctcttctttggggaggagcatctagagggggaggggccactc
aatgtgttggagtcccccgagagggccaagcgggacagtcacctagccaaggcggctgtg
tccaataccgccagctcccggtcctccagttccatagatttggagggtatagccctgaac
tctcggcgacgctgtgccagtgagtgcttcactaactccacagacaacatgatgtacggg
tcgtcgtttgactcggtggaggattatgggggttatttgtcttctcctattcgtatttct
attggagaagatgtagaattgcctacaggtccagaccccacaccagaaatgaagaaagac
ttcatggagcgctgtacaacctctgtggatcctatcactgtcccatacttatctcccctg
gtcctccggaaggagctggataacatcctggccaatgaaggagacctctccctgggctcg
gacgagttcctggaccagcatccgatcatattctggaacctggtgtggtacttcaagaga
ttggaggtccctagtcatgtccctggtttcttactgaccgccaagtccatcaatggcgag
gagggcaatgttggcgtatacagcagtaagcatgttttgatacgtccaatgtgggataac
gtccgcatccatgaagaagtgggcctgcctatgtacaggtcatggaatgaaggtcgaagt
tctcacatggtcgatgcactgattacagaggcgcaacctttcaataaagcaattttacat
caaattattgagagcatcatgtgtaatgaccttttgacccctataaaactggtgatgaac
tgtcgtcgaaggctgcgtctaaggaagagtcgacacaggagcatgtaccgagacatcgtt
ttcctggcctttatggcctgtggcaaggagaatattgataatgatgctttcgatcgtgaa
tacagacaagcattcaacaagctgtcacacatggaaatcaagcgaacacagagagacgac
agacctcgcaaaaccagaatcatttggtgtcgaaaagtgtttggggaattagaagtgtag
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integrated database retrieval system
