Magallana gigas (Pacific oyster): 105317885
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Entry
105317885 CDS
T03920
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105317885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crg03041
]
105317885
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105317885
Spliceosome [BR:
crg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105317885
Complex C
U5 SnRNP specific factors
105317885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
Motif
Other DBs
NCBI-GeneID:
105317885
NCBI-ProteinID:
XP_034330899
LinkDB
All DBs
Position
8:complement(36812228..36840741)
Genome browser
AA seq
2148 aa
AA seq
DB search
MAGAAARALQYEYKANSNLVLQADRSLIEKRARDEPTGEVTSLVGKIAGTRMGEKAMRSK
PPQMEERKVKRTKRDEAQRDMMKMKGATLLSEGIDDFVGIVYRPKTQETRQTYEVILSFI
QAALGDQPRDVLCGAADEVLQVMKNDRLKDKERKKEVEELLGGLAEERFAVLVNLGKKIT
DWGQEEKMQTDDNIDETYGVNVQFEESEDEFQDDGDVYGEIKEVEEEEDEDEGVEAEYND
TLHTNLAGEDGGNKSDSGLHPRDIDAFWLQRKLSKHYPDDPTMAQTKAGEVLQTLKSASD
DREAENQLVMLLGFDMFDFIKVLRQHRQMILYCTMLAQAQTDEEKKGIEEKMSADTELSG
YLKALGATDKEDLVSEERARRQQARQSRVAADIEAMDVDQSQQKLGEVNLVDIEDLTFSQ
GSRLMANKRCQLPDGSYRKQRKGYEEVHVPELTPKSFETDETLLPIDRLPKYAQPAFVGF
KCLNRIQSRLWKSCMESDQNLLLCAPTGAGKTNVALLCMLREIGKHINADGTINTDEFKI
IYVAPMRSLVQEMVGSFGERLKSYGIRVDELTGDHQLTKEQITNTQIIVCTPEKWDIITR
KGGERTYTQLVRLMIFDEIHLLHDDRGPVLEALVARTIRNIETTQEDVRLVGLSATLPNY
EDVATFLRVDPAQGLYFFDNSFRPVPLEQQFIGITEKKAVKRFQIMNEIVYEKVMEHAGK
NQVLVFVHSRKETGKTARAIRDMCLEKDSLGMFLKEGSMSTEVLRTEAEQVKNLELKDLL
PYGFGIHHAGMAKVDRILVEDLFADRHIQVLVSTSTLAWGVNLPAHTVIIKGTQIYNPEK
GRWVELSALDVMQMFGRAGRPQYDTKGEGIMITNHSELQYYLSLMNQQLPIESQFVSRMS
DCLNAECVLGTVQSVKEAVDWLGYTYLYIRMLRAPSLYGVGHDMLKDDPLLQQRRKDLIH
TAALTLDKNNLIKYDKKTGQIQSTELGRIASHYYCTNETIATYNQLLKPTLSEIELFRVF
SLSSEFKHLTVREEEKLELLKLLERVPIPIKESIEEPSAKVNVLLQAYISQLKLEGFALM
SDMVFVTQSAGRLMRAIFEIVLHRGWAQLADKALALCKMVNKRMWQSMCPLRQFKDKKMP
IEVIKKIEKKNFPFERLYDLDPLEIGEFIRVPKSGKTIHKYVHLFPKLELSVHVQPITRA
TLRVELTITPDFQWSEEVHGTSEAFWILVEDVDSEVILHHEYFLLKSKFAQDEHVVKFFV
PVFEPLPPQYFIRVVSDRWIGAETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRSPA
FESLYSDKFPFFNPIQTQVFNAVYHTDENVFIGAPTGSGKTICGEFAILRMFSQNPDGRC
VYVTPLEPLAQQVYAEWTAKFGGQLGKKVVLLTGETGTDLKLLAKGNIIISTPEIWDVLS
RRWKVRKNVQSVNLFVVDELHLIGQEVGPVLEVICSRMRYMSAHLEHTIRVVALSSSISN
AKDVSQWLGCTPTGFFNFHPNVRPVPLELHIQGLNISHNLSRIIAMAKPTYQAILRHSPR
KPVIIFVPSRKQTRLTAIDILTFSAAEIQVDTETPRSRFLHVKEEDIQPFLEKITDKTLK
ETLSNGVGYLHEGLSDIERKAVEHLFSSGAVQVLVASRSLSWGMSVSAYLVVVMDTQYYD
GKTHSYEDYPVPDVLQMIGRANRPLTDQEGKALIMCQSSKKEFFKKFLYEPLPVESHLDH
CLHDHFNAEVVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVTHRHLSDHLSELVE
NTVSDLEQSKCISVEDEMDMTPLNLGMIAAYYYINYTTIETFSLSLNNKTKIKGLLEIIS
NAAEYEDVPIRHHEEAILKSLASRLPNKLSNQKYNDPHVKTNLLLQAHLSRMQLSAELQS
DTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWGKDSYLKQLPHFSQDI
IKRCQEKKMESIFDIMEMEDDERNELLQLTEEQMADVARFCNKYPNIEMSFDVQEKEGIH
SGSPVNVLVSLEREDELVGPVVAPFFPQKREEGWWVVIGDNKSNSLLSIRRLTLQQKAKV
KLDFVAPSPGHYNYTIFFMSDAYMGCDQEYKFSIDVKEGESDSESDSD
NT seq
6447 nt
NT seq
+upstream
nt +downstream
nt
atggctggtgcagcggccagagcattgcagtatgaatacaaggcgaactctaaccttgta
ttgcaagcagatcgttcgctcattgaaaaaagagctcgcgatgaacccacgggagaagtc
acctcccttgttggaaagattgcgggaaccagaatgggtgagaaagccatgagatccaaa
cctcctcagatggaagagcgaaaagtcaagagaacaaagcgtgatgaagcacagagggat
atgatgaaaatgaaaggagcaactttattgtctgaaggcattgacgattttgttggaatc
gtctacagacctaaaacccaggaaacccgacagacatatgaagttattcttagctttatc
caagctgccttaggtgatcagcctcgcgacgtattatgcggtgctgcagatgaggtctta
caggtgatgaagaatgacagattgaaggacaaagagagaaagaaggaagtagaggagtta
ctgggaggactggcagaggagaggtttgccgtacttgtcaaccttggcaagaaaatcact
gactgggggcaggaggagaagatgcaaacggatgacaacattgatgagacatacggtgtg
aatgtacagtttgaagaatcagaggatgaatttcaggatgatggagacgtgtatggtgaa
attaaagaagttgaggaagaggaagatgaagatgaaggagtggaagctgagtataacgac
accctacacactaatttggcgggagaagacgggggtaacaagtcagactctggcctccac
cccagggacattgacgccttctggctccagagaaagctgagtaaacactacccagacgac
cccacaatggcccagaccaaggctggagaagttctacagactctcaagtctgcgagtgat
gacagagaagcagaaaaccagctggtcatgttgctgggatttgacatgtttgatttcatc
aaggtccttcgacagcacaggcagatgattctgtactgtaccatgttggcacaagctcag
actgatgaagagaagaagggcattgaggagaaaatgtctgcagacacagagttgtcgggg
tacctcaaggccctaggggcgacagacaaggaggacctcgtgtctgaggagagggctagg
cgccaacaagccagacagagcagggtggctgcagacattgaggcgatggatgtagatcaa
agtcagcaaaaacttggagaggtgaatctggttgacattgaggacttgaccttcagtcag
ggcagtcgtctgatggccaacaaacgatgtcagctaccagacggctcgtacaggaagcag
aggaaaggttatgaagaagtacatgtaccagagttgacgccaaagtcttttgaaacagat
gagaccctgctgcctatagacagactacctaagtatgcccagcctgcttttgtcggtttt
aagtgcctgaatcggatacagagccggctctggaagtcctgtatggagtctgaccaaaac
ctcctgctgtgtgctcctacgggagctggtaagactaatgtagccttattgtgtatgctg
agggagatagggaaacacattaatgctgatggcacgatcaatacggacgagttcaagatc
atctacgtcgccccgatgaggtcactcgtacaggagatggttggcagctttggagagagg
ctgaagtcgtacggtatccgtgtggacgagttgaccggggaccatcagctgaccaaggaa
cagatcaccaacacccagatcatcgtctgtactcccgagaagtgggacatcatcaccagg
aagggcggcgagcgcacctacactcaactcgtcaggctcatgatattcgatgagattcat
cttctccatgatgacagaggaccagttttggaggctctagtggccagaaccatcagaaac
atagagaccacccaggaagacgtacgactggtggggctcagtgccacactccccaactat
gaggatgtggctaccttcctccgcgtagaccccgcccagggactctacttcttcgacaac
agcttccgcccagtgcctctggagcagcagttcatcggaatcacagaaaagaaagctgtc
aagcgttttcagatcatgaacgagattgtgtacgaaaaagtgatggagcatgctgggaag
aatcaggttttggtgtttgtacactctagaaaggagactggtaagacagcacgagctatc
cgagatatgtgtctggagaaggactcgcttggaatgtttctgaaggaggggtcaatgtcc
accgaggttctcaggacagaggctgaacaggtcaagaatctagagctgaaagacttgcta
ccctatggatttggaatccatcatgcaggaatggccaaagtggaccgtatcctggtagag
gacctgtttgccgaccggcacattcaggtgctggtgtccacctccaccctggcctggggg
gtcaacctacccgcccacacggtcatcatcaaggggacacagatctataacccagagaag
gggcgctgggtggagctcagtgctcttgatgtcatgcagatgtttggaagagctggccga
ccccaatacgacacaaagggggaggggatcatgataaccaatcacagcgagctacagtac
tacctgtcactgatgaaccagcagttaccgattgagagtcagtttgtcagtcggatgtcg
gattgcttgaatgcggagtgtgttctgggaactgtacagtctgtgaaagaagcagtggac
tggctgggatacacatatttgtacatcagaatgttacgagcgccgtcgctgtacggtgtg
ggccatgacatgctgaaagatgacccacttctacagcagcgacgtaaagatctgatccac
actgcagccttgaccttggacaaaaataacctgatcaaatacgacaagaagactggtcag
atccagagcacggagctcgggcgcatcgccagtcactactactgcactaacgagaccatt
gccacctacaaccagctgctcaagcctacgctcagcgagattgagttgttccgagtgttc
tcgctgtcatccgagttcaagcacttaacagttagagaggaggagaagctggagttgtta
aagttactggagagggtacccatcccgatcaaagagagcattgaggaacccagcgccaag
gtgaatgtgctgctacaggcctacatctcccagctgaagttggagggatttgccctgatg
tccgacatggtgtttgtgacccagtctgcggggcgattgatgagggccatatttgagatc
gtcctacacagaggctgggcccagctggctgataaggccctcgccctctgtaagatggtc
aacaagcgcatgtggcagagtatgtgtccactaaggcagttcaaggacaagaagatgccc
attgaggtcatcaagaaaatcgagaagaaaaacttcccctttgagcgcctctatgacctt
gatcctctggaaatcggagagttcatccgagtaccaaagagtggaaaaactatccataaa
tatgtgcatcttttccccaaactagaactgtctgtgcatgtccagccaatcacaagggct
acactgagagtggaactgaccatcacccctgacttccagtggagtgaggaagttcacgga
acctccgaggcgttctggatcctggtggaggatgtggacagtgaggtcattctacatcac
gagtacttcctgcttaaaagcaaatttgctcaggatgagcatgttgtgaagttctttgtg
cctgtgtttgagccacttcctccccagtacttcatcagggttgtgtctgaccgttggata
ggggctgagactcagcttcccgtctcgttccgtcacctgatcctcccagagaagtacccc
ccacccaccgagctcctggacctccagccacttcctgtctccgccctcaggagcccagcc
tttgagagcctctacagcgacaagttccccttcttcaaccccatccagacccaggtgttc
aatgctgtgtaccacacagatgagaacgtgtttattggggctcccacagggagtggaaag
acaatctgtggggagtttgccatcctgaggatgttctcacagaacccagatgggcgctgt
gtatatgtaaccccgctagagcctctggcacaacaggtgtatgcagaatggacggccaaa
tttggaggacagctggggaaaaaagtggttcttttgacaggtgaaactggcactgacctc
aaacttctggcaaagggtaacatcatcatcagtactccagagatctgggacgtcctgtca
aggcgatggaaagtcagaaaaaatgtgcagagtgtcaatctctttgtggtggatgaactc
catctgattggtcaggaagttgggcctgtgttggaggtgatctgctcccgtatgcgttac
atgtcggcccacttggagcacacaatccgagtggttgccctcagctcctccatctccaat
gccaaggacgtgtcccagtggcttggctgtacccccacagggttcttcaacttccacccc
aatgtcagacctgtgcccctggagctacacatacagggtttgaacatcagccacaatttg
tcccgaataattgcaatggccaagcccacttaccaggccatcctgcgtcactcaccacgt
aaacctgtcatcatcttcgtgccatcacggaaacagacacgcttgactgccattgacatt
ttgaccttcagtgctgctgagattcaggttgacacagagacacctagaagtcgcttcctc
cacgtaaaggaggaagatatccaaccattcctggagaagatcacagacaagaccctgaag
gagacactcagtaatggcgtggggtacctccatgagggcctgagtgacatagagaggaag
gcagtggagcatctgttctctagcggtgctgtacaggtgttggtggcctctcgcagtctc
tcctggggcatgagtgtgtctgcctatttggtggttgtcatggatacccagtattatgac
ggaaaaacacactcttatgaagattatccagtgccagacgtcttacagatgattggtcga
gccaaccgtccactcacagatcaggaaggtaaagctttgatcatgtgtcaaagttcaaag
aaagaattcttcaagaaattcctgtatgaacctcttccggtggagagccacttggaccac
tgtttacatgatcacttcaatgctgaggtggtgacaaagaccattgagaacaaacaggat
gctgtggactacctgacatggaccttcctgtacagaaggatgacccagaaccctaactac
tacaaccttcaaggtgtgacacacagacatctgtcggaccacctgtctgagctggtcgag
aacacggtgtcagatcttgaacagtccaagtgtatcagtgtggaggacgagatggacatg
acgccgctcaatctgggcatgatcgccgcctactactacatcaactacaccaccatagaa
actttcagtctgtctctgaacaacaagacaaagattaaaggtctcctggagattatctct
aatgccgccgagtatgaagatgttcccatcagacaccacgaggaggccatcttgaaatct
ctggccagtcgactgccgaacaagttgtccaaccagaagtacaacgaccctcacgtcaag
accaacctcctattacaggcccacctgtcccgcatgcagctgtcggcggagctacagtcc
gacactgaggagatactcagcaaggcaatccgcctgatccaggcctgtgtggatgtactg
agcagtaacgggtggctgagccccgccctagcagccatggaactcgctcagatggtgacc
caggcaatgtggggcaaggactcgtatctcaaacagctcccccacttctcacaggacatc
attaagcggtgccaggaaaagaaaatggagagcatctttgacatcatggagatggaggat
gatgaaaggaatgagcttctacagctgacggaggaacagatggccgacgtggctcgcttc
tgtaacaagtaccccaacatcgagatgtcattcgatgtccaagaaaaagaaggcattcac
agtggttcccccgtcaatgtgcttgtctccttggaaagagaagatgaactagtgggacca
gttgtggcaccattcttccctcagaaacgagaggaaggctggtgggtggtgataggggac
aacaagtccaactcgttgctgtccatcaggagactgaccttgcagcagaaggccaaggtt
aaactggactttgtggccccctcccccggtcactacaactacaccatctttttcatgagc
gacgcctacatgggctgtgaccaggagtataaattcagcattgacgtgaaggagggcgag
agtgacagcgaaagcgacagtgattag
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integrated database retrieval system
