Magallana gigas (Pacific oyster): 105318040
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Entry
105318040 CDS
T03920
Name
(RefSeq) Y-box factor homolog
KO
K09276
Y-box-binding protein 1
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crg03000
]
105318040
03019 Messenger RNA biogenesis [BR:
crg03019
]
105318040
03041 Spliceosome [BR:
crg03041
]
105318040
Transcription factors [BR:
crg03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Cold-shock domain factors, YB-1/DbpB-like
105318040
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
105318040
mRNA cycle factors
Common to processing body (P body) and stress granule
105318040
Spliceosome [BR:
crg03041
]
Common components
Common spliceosomal components
General mRNP proteins
105318040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSD
OB_RNB
Motif
Other DBs
NCBI-GeneID:
105318040
NCBI-ProteinID:
XP_011413207
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All DBs
Position
3:complement(49167778..49172645)
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AA seq
307 aa
AA seq
DB search
MRHYGSPWGRPSLQRANKGIEWKSIYHRTINNIFLPSEAMSDSENQPEKEAEVEKKVIAN
KITGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIIKNNPKKYLRSVGDGEAVEFDVVEGE
KGNEAANVTGPEGAHVQGSKYAADRRRYRRYFPRRRGGGPGRPRSEGEEIDEEEETDEGK
RPPPRRPYYRGGGGRGFYRGFYQGGPRRPPRYQNAIMDGPGRQPQFRRPYWRRGYRRYYA
QGEGYEGPPQYGYRGGRGRGRGRGRGRGRGRGYFRRREDGERGRENESGESPEPTQEGNE
DRNEQQE
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgcggcattatggttcgccttgggggcggccatctttgcagagagcgaacaaagggata
gagtggaagtccatataccaccggacgataaataacatctttttaccatcagaggccatg
tccgactccgaaaaccaaccggagaaagaggccgaggttgaaaagaaggtcatagcaaac
aaaataacggggacggtgaagtggtttaacgttaaaagcggatatggcttcataaacaga
gatgacacaaaggaagatgtctttgtccatcagactgccatcatcaagaacaatcctaag
aagtacttgagaagtgttggggatggagaagccgtagaatttgatgtagttgagggggaa
aagggaaatgaagcagccaatgtcaccggacctgaaggggcccatgtccaaggcagtaag
tacgccgctgaccgcaggcgctaccgtcggtacttccccaggaggcgtgggggtggacca
ggccgtccaagaagcgagggagaagaaatcgatgaagaagaggaaacagatgaaggaaag
agaccccctcctcgtcgcccatactacaggggaggcggaggaagaggcttctacaggggc
ttctaccagggtgggcctcgaagacctcctcgctaccagaatgccatcatggacggacca
ggacgtcaacctcagttccgtaggccatactggaggagaggctaccgaagatattatgcc
cagggtgaaggctatgaaggtcccccacaatatggataccgtggggggcgtgggcgaggc
cgagggaggggcagaggtcgcggacgtggcagaggatacttcagaaggagggaggatgga
gagagaggcagagaaaatgagagtggtgaatctcctgaaccaacacaggaaggcaatgag
gacagaaacgagcaacaggaatag
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