Magallana gigas (Pacific oyster): 105318085
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Entry
105318085 CDS
T03920
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen2
KO
K15322
tRNA-splicing endonuclease subunit Sen2 [EC:
4.6.1.16
]
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
crg03016
]
105318085
Enzymes [BR:
crg01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
105318085
Transfer RNA biogenesis [BR:
crg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
105318085
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GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-GeneID:
105318085
NCBI-ProteinID:
XP_034330641
UniProt:
A0A8W8N8R1
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Position
5:17827529..17832008
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AA seq
557 aa
AA seq
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MSNSKLINPKKKRRVFATKESPFPVPIASITGEPPSETQWMYYTGNLVGNQVIVHHSGDI
SFLYKMGFFGKGTLSRSKPEFNQRCKMATLPTSGGTDTCRVISRRSYIRRLNWKSGKSNS
QQDEYDSSQEWEFWEDEKNHMDVETSNVQHSDLPSTNIKEDIRNTSKKDLIGPEISQSAD
DDEWSAAVESWDNAEADEDFWGTGTDDKTPDIPSSSKESTVPVQSTVAGGKQELNSQKSS
KCNDDLMEIKSPTNVSNLDKNLQCDHSSFDNVPDVTGGDEKCSTAEQSKCVPNSEENVNR
VDMGDNQLTNISQLCVKETKKKDSQNERDKEIKETDPLCLSSEEHGELFVMEDSDNEGED
GKRKWKEPHWRPVVKEDPYFVKEFLHLSLEESFFLAYGLGCLRVYENEKLLNLTDLWRAF
CQRHNRFISLYVAYHYFRSKGWVPKSGLKFGTDFIIYKEGPPFYHGSYSVIVKMVRDDDL
KEEDNLPTLSWTQIAGLNRLTEHVAKQLLICYVIRPTHVNSDLMLSPNVISQFKVKEIVV
SRWVSSQERESKTEEIP
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgtctaattcaaaattaataaatcccaagaagaagaggcgagtgtttgccaccaaagag
tctccattccctgtcccaatagcaagcattacaggcgagccaccatcagagacgcaatgg
atgtactacaccgggaacttggtgggtaaccaggttattgtccaccactcaggggatatc
agcttcttgtacaaaatggggttctttgggaagggaactctctccaggagtaaaccagaa
tttaatcagagatgtaagatggcaacacttcccacatcagggggaacagatacatgcagg
gtgatcagtcgcaggagctacataagaagactcaattggaaaagtggaaaatccaactca
caacaagatgaatatgacagttctcaggaatgggaattctgggaagatgaaaaaaatcac
atggatgttgaaacaagcaatgttcaacattctgatttaccttcaaccaatatcaaggag
gatatcagaaatacttctaaaaaagatttgattggtccagagatcagccaatcagctgat
gacgatgagtggtcagcagctgtggaatcctgggataatgccgaggcagatgaggatttc
tggggaacaggaacagatgataagacaccagacattccttcatcatcgaaagaaagtaca
gtacctgtacaaagcactgtggcaggaggaaaacaagagttaaattcacagaaatcttca
aagtgtaatgatgatttaatggaaattaaaagccccacaaatgtttccaatcttgacaaa
aatttacaatgtgatcattcctcttttgataatgtacctgatgtaactggtggtgatgaa
aaatgttcaacagcagaacagtcaaaatgtgtcccaaattctgaagaaaatgtcaatcga
gtggacatgggagacaaccagcttacaaacatttctcagttgtgtgtcaaggagaccaag
aagaaagattcgcagaatgaacgtgataaagaaataaaagaaactgatccattgtgtctg
tcgtcggaggagcatggcgaactgtttgtgatggaggattctgataacgagggtgaggat
gggaaaaggaaatggaaagagccccattggagaccagtggtaaaagaggatccatatttt
gtcaaagaatttctccatcttagcttagaagagagtttcttcttggcttatgggcttggc
tgcttaagagtttatgagaatgaaaagcttttaaatctcacagacttgtggagagcattc
tgccagcgacacaacagatttatctccctttatgtcgcttaccattactttaggagtaaa
ggatgggttcccaagtctggactcaaatttggaacagacttcattatttacaaggaaggt
ccaccattttatcatgggagttattctgtaatagtaaaaatggtgagagatgatgatttg
aaagaagaggacaatttgccaactttgagctggacacaaatagctggattaaatcggcta
actgaacatgtagcaaagcaactgctgatatgctatgtcataagacctacacatgtgaac
tctgacctgatgttgtccccaaatgtgatcagccaattcaaagttaaggaaatagttgtt
tcacgctgggtttcttcacaagagagagaatcaaagacagaagaaataccctga
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