Magallana gigas (Pacific oyster): 105318090
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Entry
105318090 CDS
T03920
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03013
Nucleocytoplasmic transport
crg03015
mRNA surveillance pathway
crg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105318090
09122 Translation
03013 Nucleocytoplasmic transport
105318090
03015 mRNA surveillance pathway
105318090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105318090
03041 Spliceosome [BR:
crg03041
]
105318090
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
105318090
Spliceosome [BR:
crg03041
]
Common components
Common spliceosomal components
Cap binding complex
105318090
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
MurL_epimerase_C
DUF1664
COG5_N
Motif
Other DBs
NCBI-GeneID:
105318090
NCBI-ProteinID:
XP_011413318
UniProt:
K1Q4J3
LinkDB
All DBs
Position
6
Genome browser
AA seq
790 aa
AA seq
DB search
MSRRRRDSSDEEDVGHSARKRRRGSENIDIEERLESLITRVGEKSTSSLESNLEGLASVL
EADLANYKTKIMRILCSCVVKLPEKMAVYTTLVGLLNAKNYNCGGEFVEMLIRNLKESLK
TGEYDNAKLIVRFLADCVNCHVIVAGSLLSMFDNFIEVTLEDNIPQVRSDWYVYAVMSAL
PWVAKELHEKKEAEFNKLLSTIDNYISKRQKIHVPALRVWTSDFPHPQEEYLDCLWAQIK
NLRANKWSEKQIVRPYLAFDGVLCEALQHTLPQIIPPSHNEETTYPLPRVVFRMFDYTDV
PEGPVLPGSHSIERYLIEEQIDRILRTNFAERKDCAAALLSFPSKNKIPLNYMIVEVMFS
QLFLLPVPPYLEIFYGSLLIELCKLQPGSMPQVLAQATEMLYERIDTMNVTCIERFSNWF
AYHLSNFQFRWSWDDWSTCCQMDPELPKPKFVKEVLLKAMRLSYHQRMVETVPESFEALI
PEKPHSEFKYEKEGAGSMPGTMVAHQLISAIKSKCTPEEAMVLLKDLPNPLSEEESDPTY
HPLRIDVFVSVLLHLGNKSFSHSFAAIAKFHHILKLLADTEEGQIWLLRTMFEVWSSHQQ
MMVVLVDKLLKTQIVEPSAVANWLFSSEMQPEFTKFYVWEIMHATIRKMSKQVDKLQQDV
EDAKDKLDAAKRKQADGLMDDEDEEIPTDDIIERMEERLEAAQNQQKRLFLIIFQRFIMI
LTDHLAKCEGNSIDYNTPWYKWVIERLQQIFLLHHELVFRYISTLESLLFTSDIDFHILE
IFQQFCALRS
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtcgtcgaagagactccagcgatgaggaagacgttggtcattctgcaagaaag
cgcagaaggggatcggagaatatagacattgaagaaagactggaatccctcatcacccga
gtaggagaaaagagtacttcttctctggaaagtaacttggaaggactagcaagtgtgttg
gaggcagatttggcgaattataaaacaaagataatgaggattttatgttcatgtgttgtt
aagctcccagaaaagatggccgtctataccactttagttggacttctgaatgccaagaac
tataactgtggtggagaatttgtagaaatgctaatcagaaatctaaaggaatccttgaag
acaggagaatatgacaatgcaaagttgattgttcgatttttagctgattgtgtcaactgt
catgtaattgtagctggttccctcctctccatgttcgacaatttcatagaagtaacactg
gaagacaacattcctcaggtgcgatctgattggtatgtgtatgcagtaatgtctgcccta
ccctgggttgctaaagaactgcatgaaaagaaagaagctgaattcaacaaactcctatca
accattgacaactatatcagcaagagacaaaagatccatgtcccggccctgagagtgtgg
acatctgattttcctcacccccaggaggagtatctggattgcctctgggcccaaatcaag
aatctgagggccaacaaatggtcagagaaacaaatagtgcggccgtacctggcctttgat
ggagtgttatgtgaggctttgcagcacactcttccccagattatacccccctcacacaac
gaggaaactacctaccccctccccagggtcgtctttaggatgtttgactacacagatgta
cctgagggtcctgtgttacccgggagccactccattgagagatacttgattgaggaacag
attgacaggatactccgtacaaactttgcagagcgcaaggattgtgctgcagcattactc
agctttccttctaagaacaagattcccctgaattacatgattgtagaggtgatgttttct
cagctgtttctgctgccagtgcccccctacctagagatcttctatggctccctactgatt
gaactctgtaaactacagccaggatccatgccccaagttttagctcaagccacagaaatg
ttgtatgagagaattgacaccatgaatgtgacttgtattgagagattttctaattggttt
gcctaccacttgagtaacttccagttccgctggagctgggatgactggtccacctgttgt
cagatggacccagagttacccaaacccaagtttgtgaaggaagtgcttctcaaagccatg
agattatcataccaccagagaatggtagaaacggtgccagagagctttgaagccttgatc
cctgagaagcctcactctgagttcaagtatgagaaggagggggcggggtccatgccgggg
accatggtggcccatcagctgatctccgccatcaagtccaagtgtacccccgaggaagcc
atggtgctgctcaaggatctccccaaccctctgagtgaggaagagagtgaccccacctac
catccactcaggatagatgtctttgtctccgtcttacttcatcttggcaacaaatctttc
agtcattcatttgcagccatagccaaattccatcacattttgaagcttctagctgacaca
gaggagggacagatctggttactccgtacaatgtttgaggtctggagctcacatcaacag
atgatggtagtgcttgttgataaattactgaagacccagattgtggagccatcagctgtt
gctaattggttgttttccagtgaaatgcagccagagtttacaaaattttatgtttgggag
atcatgcatgcaacaattaggaagatgagtaagcaagtagacaaactacaacaagacgtg
gaggatgccaaggataaactggatgcagccaagagaaagcaagcagatggtttgatggat
gatgaagatgaggagattcctactgatgacatcatagagagaatggaagagagacttgag
gcagctcagaaccaacaaaaacgcttgttcctgatcatatttcagagattcataatgatt
ctgacggaccatttggcaaagtgtgaaggaaatagcattgattacaatacaccttggtac
aaatgggtaattgaacgattgcaacaaatctttttactgcaccatgaattggtttttaga
tacatcagcaccctggagtctcttttatttacaagtgacattgactttcatattttggaa
atattccaacagttttgcgcccttcgttcgtaa
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