Magallana gigas (Pacific oyster): 105318403
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Entry
105318403 CDS
T03920
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105318403
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
crg01009
]
105318403
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crg04131
]
105318403
03029 Mitochondrial biogenesis [BR:
crg03029
]
105318403
Protein phosphatases and associated proteins [BR:
crg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
105318403
Membrane trafficking [BR:
crg04131
]
Autophagy
Autophagosome formation proteins
ULK complex
105318403
Mitochondrial biogenesis [BR:
crg03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
105318403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG17_like
ATG11
TBK1_ULD
ZMYND8_CC
Motif
Other DBs
NCBI-GeneID:
105318403
NCBI-ProteinID:
XP_034312739
LinkDB
All DBs
Position
7:32013827..32026615
Genome browser
AA seq
1628 aa
AA seq
DB search
MLFVFHVDTGTMMTFDMGLLAGSVAELQRVICQACHISEDKQVLLISGGESLDPNTQVHK
YHAGTDTNPIYLFSKMAIEAATPPSPSVHYGSDVDIPSQVEGSLLLPPTFGTVVARSQLA
IQIHDVDKEEVEACEKLVHDQHLQQQGWAAVVANLEDITSALKHRSEIFSEAYTGYLTCR
EDYLTTLSCVASSLDLLSKIPVLPCLLHSMEEASMSDKNLFEWISSQDPKHSLHDMVQQC
LKATEQLDQHVLDNLMLEVTDTFKQVDNPSMKEVKGIEDRLYGLDQILNGARKIVQEQSD
LAQALYQNQTRVSTLRDTSILPDLCNSHKKQLVVMVNNHKKLQETKKKCKMAKEELSVNL
HTRLRWVMLVEKRICDVDGKLMIYHENLKRLKKRLDILKQIHEAPQVYAKLVVEVVRRRK
FSTQFLKWANHLAVESQNVHEDELKRREMFHKEVGNHFLQSLFNGLEDSPSSFATEEPKA
FDQHLPPITPDDVTMLRNEVPELAQDLQVPLDVSFLMKDVFFERSMFKFDDTTVKGGPAH
GMATSDIEIINNCDEETFLTTEESLSLEQQVASSEMDPNLLLQIQKETCADKPELLMPKS
LSEELTKQMKICSKDKMPSASNVVNFHKTYPGESAIKCETDVSAKKSVCGVEGTSESFGA
STSSGEQLKSTESELSGHEKTSESASSGKRRVRRQTDPDMETSQEFTTADFYIEDSMPSS
IADSPPSKGEKQKPEPLIPEEKPEEVTVLKAKVQTLTHELEESKGKLGKLVNISQEAARL
KSDLMELLTCVKESKTVMSSEMANTQDSLTVTVKRCLASFDKNLDKFKRSLEEEQERCVE
KEKLIAQCNEKEKVLQQKLSENESLIESMNKEIESLKQKWVNSESKLEKEKENFNREFQK
QQEEHQNTIEEIKKENSLELEVELDKLRSEFQEQILELENKISEQEAVEAKLKEKISGFS
SEKSKEEEKLFAQFQQEKTDITKILQDEHEEKLKKELEACREGLEAKHKEEMESMQQCHS
DKLENLMKEQKESLTKEKDDELETLSHQLNAEFEKSYEILKETLDGDYQKALEEFKTRSE
LTVKEDKLNMEKDMKKQIDELQLQLNSYTDRMYDHKDSQTPCTESIPQGAQTDKTNTSQS
EMQTDQWQGVETKTQTDITPVAQQEAQTSLSMSEGTEVDTQTDLAAVVQQGAQTNLSMQD
GTESNTQTESPEIVQQAMQTSLSMSSEGMNIETQTEPKQQSSQEIQTSLPLRTQVEGSDM
ETQTDKMNQQQEDQASFDVTNKEDVEKEGTVDSGEIQMRSGESDVAISKEEHRNQMACIE
VRLTAEKDKALIELKRKHEKEISEMISKLEKEKSDSLTAIHNSLQAEKQVAFNEAVTKLS
QDKDKVIEDLRAKEKDLLEQLSTDQETILKLNEEKSKLEDIKTRAMSHLSDKEREYNAAR
RQLEDDLALTRQQLSQYQSQLQAMSTISVPSVMEISQIEDSSRIASLEDELKSKSEKIAE
LQQKMMEISMTTSTRHIAEDKVSITSCNVGDLALFCLDDRHDQYVVFTIGSTLHFLHTDC
QDTLGLKPNPGETKKSWVLAEITEKEYCQAKKPQNRFKVPVGTKFYRVKAKPWRPDSGAR
GTSSTAST
NT seq
4887 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttgtcttccatgttgacacagggaccatgatgacctttgacatgggtctgtta
gctggaagtgtggcagagctacagagggtgatatgtcaagcttgccacatatcagaggac
aaacaggtgctgctgatcagtggaggagagagccttgaccctaacacacaggtccacaaa
taccatgcaggcactgacacaaacccaatttatctgttcagcaaaatggcaattgaggca
gctaccccaccatcacccagtgtacactatggttctgatgtggatattcctagtcaagtt
gaagggtcacttcttttacctccaacctttggtacagttgtggccagatctcagcttgct
atacaaattcatgatgtggacaaggaggaggtggaggcgtgtgagaagttagtccatgac
caacacctccagcagcagggctgggcggccgtggtggctaacctagaggacatcacaagt
gccctcaaacacagatcagagattttttccgaggcctacacaggttacctgacgtgtcgt
gaggattacttaacaacactttcctgtgtggcatcttcacttgatctcctatcaaagata
ccagttttaccatgtcttctgcactcaatggaagaggcctccatgtcagataagaacttg
tttgaatggattagctcacaggaccccaaacacagtttacatgacatggtccagcagtgt
ttgaaggccacggagcagcttgaccagcatgtactggacaacctgatgttggaggtgact
gacacctttaaacaggtggacaaccccagcatgaaagaggtcaagggcattgaggacagg
ctgtatggactggaccagattttgaatggagccagaaagattgtacaggagcagagtgat
ttggcacaggcattatatcagaaccagacgcgggtcagtaccctgagggacacctccatc
ctccctgacctttgtaacagccacaagaaacagctggttgtcatggttaacaaccacaaa
aaactccaggaaaccaagaagaagtgtaagatggccaaagaggagttgtctgtcaatctc
cacaccagactcagatgggtgatgttggtagagaaaagaatctgtgatgttgatggaaag
ttgatgatataccatgaaaacttgaaacgactgaaaaagaggctagacattctgaaacag
atccatgaggcaccacaagtgtacgctaaactggtggtggaggtggtgcgccgaagaaag
ttctccacccagttcttaaagtgggcaaaccatttagctgttgaatcacagaatgttcat
gaagatgaattgaagaggagagaaatgttccacaaagaagttggcaaccatttccttcag
tcactgttcaatggactggaagattcaccctcatcatttgctactgaggaacccaaagca
tttgatcaacacttgcccccaattacaccagatgatgttacaatgctgagaaatgaggtc
ccggaacttgcccaagatctccaggttccactggatgtgtctttcttaatgaaggatgtt
ttctttgagcgatcaatgtttaagtttgatgacactactgtgaaagggggccctgctcat
ggcatggccacctctgacattgagataatcaacaactgtgatgaggaaacctttctaacc
acagaagaaagtctttcattggagcagcaagttgcaagcagtgagatggatccaaatctt
ctgcttcaaatccagaaggaaacttgtgctgacaaacccgaacttttaatgccgaaaagt
ctttcagaagaattaacaaaacaaatgaaaatttgcagcaaggacaaaatgccaagtgct
tcaaatgttgttaattttcacaaaacttatccaggggaaagtgcaataaaatgtgagacg
gacgtaagtgccaaaaaatctgtgtgtggtgtagaaggtactagcgagtcttttggggct
tctacttcttcaggagaacaattaaaatccacagagagtgaactctcaggacatgaaaaa
acctcagagagtgcttcatcagggaaaaggcgagtcaggagacaaacagacccagacatg
gagacctctcaagaattcactacagcagatttttacatagaagactccatgccttcttcc
attgctgactccccaccaagtaaaggagaaaaacaaaaaccagaacctttgattcctgag
gagaagccagaggaagtgacagtactaaaggccaaagttcagacattgactcatgaactg
gaggagtctaaaggcaagcttggaaaattagtgaacatttcacaggaagcagccagactg
aaatcagatttaatggagttgctgacttgtgtcaaagaaagtaaaaccgtcatgtcatct
gagatggcaaatacacaagactcattaactgtgacagtgaaacgttgtttggcttcattt
gacaagaatttagacaaatttaaaagatcattggaggaagaacaggaaagatgtgtagag
aaggagaaattaattgctcagtgtaatgaaaaagagaaggtgctccaacagaagctctct
gaaaatgagtctttgattgagagcatgaataaggaaattgaaagtttgaaacaaaagtgg
gtcaattcggagagtaaacttgaaaaggagaaagaaaactttaatagagaatttcaaaaa
caacaagaggaacatcaaaatacaattgaagaaattaaaaaagaaaattcacttgagctt
gaagttgaacttgataaattacggtccgaatttcaggagcagattttagaattggagaac
aagatatccgagcaagaggcagttgaagccaaactaaaagagaaaatttcaggcttctct
agcgaaaaaagtaaggaggaagagaaactatttgctcaatttcaacaagagaaaacagac
ataacgaagatattgcaggatgagcatgaagaaaaactgaaaaaagaacttgaagcttgc
agagagggacttgaagctaaacacaaagaagaaatggagtctatgcaacagtgccacagt
gataaattagaaaacctgatgaaagaacaaaaggaatccctgaccaaggaaaaagatgat
gagcttgaaactctgtcacaccagttgaatgcagagtttgaaaaatcatacgaaatatta
aaggagaccctagatggagattaccagaaagctttggaggaattcaagacacgaagtgaa
ctgacagttaaagaggataaactgaacatggaaaaagatatgaaaaaacagattgatgaa
cttcagttacaacttaattcatacactgacaggatgtatgatcataaggactcgcaaaca
ccctgcacagagagtatacctcaaggagcccaaacagacaagaccaacacaagtcagtcg
gaaatgcaaacagaccaatggcagggagtagagacgaaaacccagacagacattacacct
gtggctcaacaagaggctcagaccagcctctctatgagtgagggcacagaggtcgacaca
cagacagacttagcagcagtggttcaacagggggctcagaccaacttatccatgcaggat
gggacagaaagcaacactcagacagagtccccagagatcgttcagcaggcaatgcagact
agcttgtcgatgagttcagaaggtatgaacattgaaacacagacagaacccaaacagcag
agctctcaagagatacaaacaagcttgcccttgaggacacaagttgaaggttcagatatg
gagactcagacagacaaaatgaaccagcagcaagaggatcaagcttcttttgatgtaacc
aacaaagaagatgtggagaaggaaggaacggttgattcaggagaaattcagatgagatct
ggtgaaagtgatgtggcgatcagtaaagaggaacataggaaccagatggcttgtatagaa
gtgagactgacagcagaaaaagacaaggcattgattgaattaaaacggaagcatgaaaaa
gagatttctgaaatgatcagcaaacttgaaaaagaaaagtctgactctctgactgccatc
cataacagtctacaagctgaaaaacaggttgctttcaatgaagctgtgacaaaactttct
caagataaagataaagtcattgaggatctgagagctaaggaaaaagacttgctggaacag
ttgtctactgaccaagaaaccattctgaagttaaatgaagaaaaaagcaaactagaagac
attaaaacaagagcaatgtcacatctctcagacaaagaaagggaatacaatgcggctagg
cgacagttggaggatgacctggccctgaccagacagcagctgtcccagtaccagtctcag
cttcaggccatgtccaccatctctgtgccctctgttatggagatcagtcaaattgaggac
tcatcccgcattgcaagtttagaagatgagttaaagagtaaatctgaaaagattgctgaa
cttcagcagaaaatgatggaaatatccatgaccactagtactaggcacattgctgaagat
aaagtatccattacaagttgtaatgtaggggacctggccctattttgtttggatgacaga
catgaccagtatgttgtgttcactataggaagtacccttcacttccttcataccgactgt
caagacacacttggtctaaagcccaatcccggtgaaaccaaaaagtcatgggttctagct
gaaatcacagagaaagagtactgccaagctaaaaagccacagaatagattcaaggtacca
gttggaaccaaattctacagagtaaaggcaaagccttggcgaccagacagtggggcaagg
ggaacatcatcaacagccagtacttag
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integrated database retrieval system
