Magallana gigas (Pacific oyster): 105319208 Help Entry 105319208         CDS       T03920                                  Name (RefSeq) spliceosome RNA helicase DDX39B   KO K12812   ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] Organism crg  Magallana gigas (Pacific oyster) Pathway crg03013   Nucleocytoplasmic transport crg03015   mRNA surveillance pathway crg03040   Spliceosome Brite KEGG Orthology (KO) [BR:crg00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     105319208   09122 Translation    03013 Nucleocytoplasmic transport     105319208    03015 mRNA surveillance pathway     105319208  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:crg03019]     105319208    03041 Spliceosome [BR:crg03041]     105319208 Enzymes [BR:crg01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.7  DEAD-box RNA helicase      105319208 Messenger RNA biogenesis [BR:crg03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     EJC complex      105319208 Spliceosome [BR:crg03041]  Complex C   Other components    EJC/TREX     105319208  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     105319208 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DEAD Helicase_C ResIII CMS1 Cas3-like_C_2 AAA_19 Dark_CARD P-loop_SecA Motif Other DBs NCBI-GeneID:  105319208 NCBI-ProteinID:  XP_011414937 LinkDB All DBs Position 2:complement(45483550..45488351) Genome browser AA seq 422 aa AA seqDB search MSCDEMLRDYEEETSVSVSSVVPIEERRDKFSSIHSSGFRDLLLKPELLQAIKDRGYEHP SQVQHECIPQAVLSMDVLCQAKSGMGKTAVFVISTLQQIQESIDDVVVLVIAHTRELAYQ IAHEYQTFSKYLPEIKVAVFFGGLPIKRDEEVLAKNRPNIVVGTPGRLLALVQKKKLTLD NLRYFIVDECDQVLKEIVMRKDVQAIFIRSPCAKQVMMFSATLNKDLRTVCKRFISDPVE IIIDDESKLTLHGLQQYYIQMEENEKSRKICDLLDLLEFNQVIIFVNSISRCQALTSLLL EQNFPVLTIHRAMEQTERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIIINYDTPEES DTYLHRVGRAGRFGTKGLAITFVSNRSDAEVMNSVQERFEVGIEKMPTQIDVSSYIGTSE NA NT seq 1269 nt NT seq  +upstreamnt  +downstreamnt atgtcttgcgacgaaatgcttcgcgattatgaagaggagacatcagtctctgtcagttct gtcgttcctatagaggaacggcgtgacaagttctcgtcaattcacagctcggggtttcga gatttgcttctgaaacctgagctgcttcaagccattaaagacagaggttatgaacatcct tcacaagtgcaacacgaatgtataccacaagccgttttgtccatggatgttctctgtcag gcaaagtccggaatgggaaagacagcggtgtttgttatatccacactccagcaaattcaa gagtccatcgacgatgttgttgtcttggtcattgcccacacaagggaacttgcataccag attgcgcatgagtaccagaccttttcaaaatacctgccagaaatcaaagttgccgtgttt tttggcggacttccaatcaagagggatgaagaggttctcgcaaagaaccgcccaaacatc gtcgtgggaacgcctggtcgtctgctggctcttgttcagaagaaaaagcttaccctggac aatctccgttacttcattgtagacgagtgtgatcaagtactcaaagaaatcgtgatgagg aaggatgtacaggccatattcatacgatcaccttgcgcaaaacaagtcatgatgtttagt gccactctcaacaaggatctgagaactgtgtgcaagcgatttatcagtgacccagttgaa attatcatcgacgacgaatcaaaattgacactccatggactgcaacagtattacattcaa atggaggaaaatgaaaaatcgcgcaaaatctgtgacttgttggacctgcttgaatttaac caggtgatcatcttcgtgaattccatcagccgatgtcaggctttgacctctcttctcctg gagcagaattttcctgttcttaccatacacagggcaatggaacaaaccgaaagactgtcc cggtaccaacagttcaaagacttccagaagagaatactggtggccacaaacctgtttggt agagggatggacattgaaagagtcaacattatcatcaactacgacacacctgaagaatca gacacgtatcttcacagggtgggtcgagctggtcgattcgggacgaaggggttggccatt acatttgtgtcaaaccggtcagatgcagaagtaatgaattctgtgcaagagagattcgaa gtcggaatagaaaaaatgccaacacagatcgatgtatcgtcatacatcggtactagtgaa aatgcttga

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