Magallana gigas (Pacific oyster): 105319209
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Entry
105319209 CDS
T03920
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03013
Nucleocytoplasmic transport
crg03015
mRNA surveillance pathway
crg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105319209
09122 Translation
03013 Nucleocytoplasmic transport
105319209
03015 mRNA surveillance pathway
105319209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105319209
03041 Spliceosome [BR:
crg03041
]
105319209
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105319209
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105319209
Spliceosome [BR:
crg03041
]
Complex C
Other components
EJC/TREX
105319209
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105319209
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
105319209
NCBI-ProteinID:
XP_011414939
LinkDB
All DBs
Position
2:45474555..45479038
Genome browser
AA seq
426 aa
AA seq
DB search
MADNENETELLDYEDDETETTADGTGDAPVKKDVKGTYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVLAH
TRELAFQISKEYERFSKYMNNVKIAVFFGGMSIKKDEDVLKKNCPHIIVGTPGRILALCH
SKVLNLKNVKHFVLDECDKMLAALDMRRDVQEIFRNTPHEKQVMMFSATLSKEIRAVCKR
FMQDPMEVYVDDDSKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQRCM
ALAQLLVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKVLNEVQERFEVNITELPDEIDIS
SYIEGR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaatgagaacgaaactgaacttttagactacgaagatgatgaaaccgaaacc
actgcagatgggactggtgatgcaccagtaaagaaagatgtgaagggaacatatgtatcc
attcacagttctggattcagagattttcttctgaaaccagagttgctcagagccattgta
gactgtggatttgagcatccttctgaagttcagcacgagtgtattcctcaagctattctg
tccatggatgtcctttgtcaggccaagtctggtatgggaaagacagctgtgtttgtgttg
gcaacactgcagcaactggaacctgttgatggtcaggtatcagtgttggttctagcacac
accagagaattagctttccagatcagcaaagagtatgagagattcagcaagtacatgaac
aacgtgaagattgctgttttctttggaggaatgtccatcaagaaggacgaggatgttctg
aagaagaattgcccccacattattgttggtacacctggtagaattctagccctctgccat
tccaaagtcctcaacctgaagaatgtcaagcactttgttcttgatgaatgtgacaaaatg
ttggcagctcttgacatgaggagagacgtccaggaaatcttccgcaacaccccccatgaa
aagcaagtgatgatgttcagtgctacacttagcaaggaaattcgagcagtctgcaagaga
ttcatgcaagatccaatggaggtctacgtggatgacgattccaaactgactctccatggt
ctccaacagcactatgtcaaactgaaggacaatgagaaaaacagaaagctgtttgaactg
ttggatgttctggaattcaaccaggtcattatctttgtgaagtcagtgcagagatgtatg
gctctggcacagctgctagtagagcagaatttcccagcaattgcaatccacagagcaatg
acacaggaagaaagattgtcccggtatcagcaattcaaagacttccagaagagaatactg
gtggccacaaacctgtttggtagaggaatggacattgaaagagtcaacatcgtatttaac
tatgacatgccagaagactctgacacttacttgcacagagtggctcgtgcaggtagattt
ggaacaaagggtcttgctataacatttgtatcagatgaaacagatgctaaagtactaaat
gaagtacaagaaagatttgaagtaaacatcacagagctgccagatgagattgatatatct
tcgtacattgaaggacgttga
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