Magallana gigas (Pacific oyster): 105319440
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Entry
105319440 CDS
T03920
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03030
DNA replication
crg03410
Base excision repair
crg03420
Nucleotide excision repair
crg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105319440
03410 Base excision repair
105319440
03420 Nucleotide excision repair
105319440
03430 Mismatch repair
105319440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crg03032
]
105319440
03400 DNA repair and recombination proteins [BR:
crg03400
]
105319440
DNA replication proteins [BR:
crg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
105319440
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
105319440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
PTCB-BRCT
Rad17
AAA_30
AAA_16
BRCT_2
AAA_14
RuvB_N
AAA_5
nSTAND3
AAA_33
AAA_19
Motif
Other DBs
NCBI-GeneID:
105319440
NCBI-ProteinID:
XP_034327138
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All DBs
Position
5:13956235..13993871
Genome browser
AA seq
1150 aa
AA seq
DB search
MDLRNYFSVKSFKKSNEGEETSTKKEKEGQAEKALNKKSSSSRENGSKSKAPKNQSSKKT
TPQKKNSGPKKDNEKQKKKVYVIDSDSDSEFQKTSQRDKPPSAKKEVSKSNKAKKSQLED
SDDEEVSGKNGKRKRHQVSSDEEDVAISKHKRKSKRKLDSDSEEEKEVKKRLRKESGKKS
KSHVNDSDEEKPKKSTLDIFLKTPSPKKQIKEKEGKSETKAKTPINPFDFLGGDSVKRSD
RTVAAKRTKEESSTSPVVYDVEMHEDDDFQKTLDMADESKPKKVRMKSDVKQASSGSSDS
KPSLASKLAAKVQSSEEIDVIPDTPLSSKSQFTKISEKKDSPKKGKTVSPKKTVPQKTSP
VKFTPKKSPGFSSEAAATPTSEVSKTSSAKASPTKVSPDTPSMAKKGSTYRSYLNREGPR
ALGSKEIPEGGENCLESLTFVITGVLESLERDEAKSLIEKYGGKVTGSISKKTSYLVAGR
DAGESKLTKAQSFGTKQIDEDGLLNLIRTLPGKRSKYEIKAEEQIKKESSFSKKVESKPP
VKSLMKESSVTSIGDSQESASSPSRPSGEAVRAGESSLMWVDKYKPTQLKQIIGQTGEKS
NARKLLHWLTNWHKNRAAGTKPQGKFFNKSDDGSGFRAALLSGPPGIGKTTTATLVCKEA
GFSYVELNASDTRSKKSLKGEVAESLDNKTIVDFIGGTNKSTEGKKHCLLMDEVDGMAGN
EDRGGLQELVALIKSSHIPIICMCNDRNHQKMRTLSNYCFDLRFQRPRVEQIKGAMMSVA
FKEGLKIPPPAMNEIILSANQDIRQVLHNLSMWTAGEKNLTYDQAKKDSKNAKKDFKLGP
FDVCRKVLVGGEETAGMTINDKSDLYFHDYNIAPLFVQENYIHVIPFAAKGNVGRHLSLL
ARAADSLCDGDRVDRSIRERQSWNLLPSAAMYASVIPGEYMRGSLPQMVSFPSWLGKNST
TGKTDRILQELRTHMSLSTSANKLSLNLDYLPYLRKFLTQPLVVKENDGIPEVIDLMDKY
DIIKEDFDNILEVTKWPNSDDPMSQLSSKTKAAFTRTYNKEVHMTPYATGTLTKKGRGGG
AAIAEDFSMEGEEEGEGTAAVQESDEEQKSDVELDSMIKQTKKPKGKDKAPKEVSAKGKG
KGKGRGKGKS
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggatctaagaaattatttcagtgtgaaatctttcaagaagtcaaatgagggagaagaa
acaagcactaaaaaagaaaaggaagggcaagctgaaaaggcactgaataaaaagagttca
tcaagtagagaaaatggctcaaagagtaaagctcccaagaaccaatcttcgaagaaaaca
actccccagaaaaaaaattcagggccgaaaaaagacaatgagaaacagaaaaagaaagtt
tatgtgatagacagtgactctgactcagagtttcagaaaacctctcagagagacaagcca
ccaagtgcaaagaaagaagtgagtaaaagtaataaagcaaagaagtcccagttagaggac
agcgatgatgaagaagtctctggaaaaaatggcaagaggaagcgtcatcaagtaagtagt
gatgaagaagacgtagcaatttctaaacataaacgcaaatcaaaaagaaaactagactcg
gattctgaagaggaaaaggaagtgaaaaaaaggctcagaaaggagagtgggaaaaagtca
aagtcacacgtgaatgattcagatgaggaaaaacctaaaaagtcaacactggatatattt
ttgaaaacccctagtcccaaaaaacagattaaggagaaagaaggaaagtctgaaacgaaa
gcaaaaactcctattaatccatttgatttcttaggaggcgactcggtaaagcgatctgat
agaacagtggcagctaaacgcacgaaggaagagtccagcacgtcccctgttgtgtacgac
gttgagatgcatgaagatgatgacttccagaaaacacttgacatggcggatgagagcaaa
cccaaaaaagtacggatgaaaagtgatgtcaagcaagcatcttctggttcatcagacagc
aaaccaagtctggcaagcaaattagcagccaaggtccaatccagtgaggaaattgatgta
attcctgatacaccgctctccagcaagagtcagtttacaaagatatctgagaagaaagac
tccccgaagaaaggaaagacagtctcgcctaaaaagaccgtcccacagaagacctctcct
gttaagttcacccccaagaagtctcctgggttctcaagcgaggcagcagccacacccaca
tctgaagtgtcaaaaacttctagtgcaaaagcaagtcctaccaaagtatcccccgacact
ccttccatggccaagaaaggtagcacctaccgcagctacctgaacagagagggaccccgg
gcacttggatccaaagaaattcctgagggtggagaaaactgtttggagtccctaaccttt
gtgatcactggcgtattagaatctctggagcgggatgaggccaagagtttgatagaaaaa
tatggcggaaaagtgacaggaagtattagcaagaaaaccagctatctagtggcagggcga
gatgcaggagaaagcaaattaactaaggcccaaagctttggaacaaagcaaattgatgaa
gatgggttgctgaacttgatacgaacgcttcctggaaagcgatccaagtatgaaataaaa
gcagaggagcagattaaaaaggaatcgtctttttctaagaaagtagagtcaaaacctcct
gttaagtctttgatgaaagagtcatctgtaaccagcattggagactctcaggagtcagca
tcttcacccagcagaccttcaggagaagcagttagggcgggggagagtagcctcatgtgg
gtagacaagtacaagcccactcagctcaaacagatcattgggcagactggagagaagagc
aatgccaggaagcttctccactggctcaccaactggcacaagaacagagccgctggaacc
aagccacaaggtaaattctttaataagagtgatgacgggtcaggattccgagcagctttg
ctgtctgggcctcctggtataggcaaaacaacaacagcaaccctagtgtgtaaggaggct
ggtttttcctatgtagaattaaatgcttcggacacaagatcaaagaaaagtttgaaaggg
gaggtggctgagtcgttggataataaaacaattgtggattttattggaggcacaaacaaa
agcacggagggcaagaaacactgtctgctgatggatgaagtggatggaatggcggggaat
gaggaccgaggaggactccaagagctggtcgccctcatcaagtcctcacacattcccatc
atctgtatgtgtaacgaccgcaaccaccagaagatgaggaccctctccaactactgcttc
gacctacggtttcagagacctcgagtcgaacaaatcaagggtgctatgatgtctgtagca
tttaaagagggcttgaaaattccacctccagccatgaatgaaattatcttgtcagccaac
caagatattcgacaggttttacataatttgtcaatgtggactgctggagaaaagaatctg
acatacgatcaggccaagaaggattcaaaaaatgccaagaaggatttcaagttgggtcct
ttcgatgtttgtcgtaaagttttagttggtggtgaagaaacagctgggatgacaatcaat
gataaatcagacctatacttccacgattacaacatagcgcctctgtttgtccaagaaaac
tacatccatgtcattccttttgctgcaaagggtaacgtgggtcgtcacttgtccctgctg
gcccgcgctgcggacagtctgtgtgacggggaccgagtggaccgctctatcagggagagg
cagtcctggaacctactgccctctgcggcaatgtatgctagtgtgatcccaggggagtac
atgaggggcagccttccccagatggtgagttttccaagctggcttggcaagaactcgacc
acagggaagacagatcgaattctccaggaactcagaacacatatgtcattatcaacatcg
gcaaataaactgagtcttaaccttgattatctcccatacctgagaaaattcctgacacaa
ccattagtggtcaaagagaatgatgggatacctgaggtcatcgatctgatggacaagtat
gacatcatcaaggaggactttgacaacatcctggaggtcaccaaatggcccaacagtgac
gacccaatgtcacagctcagctccaagacaaaagctgcatttacaagaacctacaataaa
gaggtccatatgaccccctatgctacgggaaccctaaccaagaaaggtcgagggggtggg
gcagctatagctgaggacttcagcatggaaggtgaggaggaaggagagggaacagctgct
gtccaggagagcgatgaagagcagaagagcgatgtagaactggactccatgattaagcaa
actaaaaaaccaaaagggaaggataaagcaccaaaggaagtatcagcaaagggaaaagga
aagggaaagggaagaggaaaagggaaaagttga
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