Magallana gigas (Pacific oyster): 105319712
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Entry
105319712 CDS
T03920
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
crg04054
]
105319712
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105319712
Pattern recognition receptors [BR:
crg04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
105319712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RIG-I_C-RD
RIG-I_C
AAA_19
AAA_30
P2RX7_C
Cas3-like_C_2
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
105319712
NCBI-ProteinID:
XP_011415657
LinkDB
All DBs
Position
9:complement(22971762..22982827)
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AA seq
794 aa
AA seq
DB search
MECRKDSKRKDSDADVDEMETDVNEGKNLKRKVEETVSESSIEELEENRLLNDDGNSDET
DAEISSDMERMALSDSEDEPGDNKENVKLRGLQLRNYQKELAENAIQGKNTIVCSGTGTG
KTRVAFAIIDDHIKKHPEGKVVVMAPTVPLVNQHYMVLRRLLPHLVEKTLKITGESERSE
QLHMFVGAEYQVFLLTPAILENAIHPEKDELILSKFSLMIFDECHHACKGHTYKQIMLKY
HLMKSDGKTKLPQIVGLTATLGTNKANTPSKAKEHILKVMANLDVHLLSTVVKYKDDPQL
NRDQIDIEKVKLLQDVKNDPVHKRIEDVMEEIEKILDAEKGHLDAEHEDEEEILKTLLRK
PNAKRTLEASRNSPAYVQWCCHLQDKAIPILSRKPDPSERIRLGGEYLKKLSELLEVNDC
LTGDIALEVLKKEVENMDVENVTNNERKLATLMITLQSDLQKMQAGSTAQTNSVKNVNVL
LRTMEDNIVKDKANGGQTQFIIFVKTIEVAKRLSEMLKIKAYTCESLIGTRAMSQTDQII
ILDKFREKKIQGIVATSVAEEGIDIPDCDLVILYNYIGNEISYKQAMGRARKLKAKILVL
GKPTDYDRETINKARIKYMEQAVEMIRSENVEEKIRNIIEEMVAKQELKMLTASQAETKP
EGAANHRLICKCGHFEIDCSVLRCIDNTNYAALDVKLWDKIEEKPLTKKANTKSDLVMQA
EWNHQGCQKKLGTIFLYNGVRLLYLSQKSFSYDTKDEDRPLPVQQWKKLPFQIPSLTIKE
LLEHQKLLMANGKN
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggagtgcagaaaagactcgaaaagaaaggactccgatgcagatgtagacgaaatggaa
actgacgtgaatgaagggaagaatcttaaaaggaaagtagaggaaacagtttctgagagt
tctatagaggaactcgaggagaatcgtttactaaatgatgatggaaattctgacgaaacc
gatgccgaaatttcctctgatatggagcgaatggctctatctgatagtgaagatgaacct
ggtgataacaaagaaaatgtgaagcttagaggtcttcaacttcgcaactatcaaaaggag
ctagcagagaacgccattcaaggaaagaacaccattgtctgctcaggaacaggtactggg
aaaacccgtgtggcatttgccatcattgatgaccatatcaagaaacatcctgaaggtaag
gtagtagtaatggcccccacagttccactggttaaccagcattacatggtcctgagacgt
ctgttgcctcatttagtggaaaaaaccctgaaaataactggtgaaagtgaaagaagtgaa
caactccacatgttcgtgggagctgagtaccaagttttccttcttacaccagccatcttg
gaaaatgctatccatccggagaaggatgaactcattttgtccaagttttcgctgatgata
tttgatgaatgtcaccatgcctgcaagggtcacacctacaagcaaatcatgctgaaatat
cacttgatgaaaagtgatggaaagacaaaattgcctcagattgtgggtctgacagcaaca
cttggtaccaacaaggccaacactccaagcaaagcaaaagagcacatcctcaaggtcatg
gccaacttagatgtccatctgctgtcaactgtcgtcaaatacaaagatgacccacagtta
aacagagatcaaattgatattgaaaaagttaaacttctacaggatgttaaaaatgatcca
gttcacaaaagaattgaggatgtaatggaagaaattgagaaaatcttggatgcggaaaaa
ggacacttagatgcagaacatgaagatgaggaagagatattgaagacgttgttaagaaaa
ccaaatgctaaaaggacactggaagcgagcaggaattcaccagcatatgtgcagtggtgt
tgtcatctgcaagataaagccattccaattctgtctagaaagcctgatccttctgaaaga
atacgacttggtggggagtatctgaagaaactgagtgagttgctggaggtaaatgactgt
ttgacaggagacattgctttggaggttctgaagaaagaagtggagaatatggatgtggaa
aatgtcacaaataatgagagaaaacttgcaactctgatgatcacactgcaatcagatcta
caaaaaatgcaggctggttccactgctcagacaaattctgtaaaaaatgttaatgttctt
ttgagaacaatggaggacaatatcgtaaaggacaaagcaaatggtggacaaacacagttc
atcatatttgtaaaaactatagaggtggccaaacgattgagtgaaatgttaaagatcaag
gcttatacatgtgaaagcctgattggaacaagagccatgagccaaacagatcaaattatc
atcttggataaattccgtgaaaagaaaattcaaggaattgttgccacctcagtggcagag
gagggtatagatatcccagactgtgacctagttatcctgtataactatattggaaatgaa
atatcatataaacaggccatggggcgagcaagaaaattgaaagccaaaatccttgttctg
ggaaaaccgactgactatgatagagagactatcaacaaggcccggataaaatacatggag
caggctgtagaaatgatcagatctgaaaatgttgaggaaaaaattagaaacatcatcgaa
gaaatggttgcaaaacaagagctgaagatgttgacagcgtcacaggcagaaacaaaacca
gagggcgctgcaaaccacagactgatctgcaaatgcggtcattttgaaattgattgcagt
gtactgcggtgcattgacaacacaaattatgctgcgcttgatgtcaagttgtgggacaag
attgaagaaaaacctctgacaaaaaaggccaatacaaagtcagatttggtcatgcaggcc
gagtggaatcaccagggctgccagaaaaaactgggaaccatctttttatacaatggtgtt
cgtttgctttatttatcgcagaagtccttcagttatgacaccaaagatgaagatcgtccc
ctaccagtccagcagtggaagaaactaccattccaaattccatccttaaccatcaaagag
ctgcttgagcaccagaagttgctaatggctaatggaaaaaattga
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