KEGG   Magallana gigas (Pacific oyster): 105320057
Entry
105320057         CDS       T03920                                 
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
crg  Magallana gigas (Pacific oyster)
Pathway
crg03030  DNA replication
crg03410  Base excision repair
crg03420  Nucleotide excision repair
crg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    105320057
   03410 Base excision repair
    105320057
   03420 Nucleotide excision repair
    105320057
   03430 Mismatch repair
    105320057
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:crg03032]
    105320057
   03400 DNA repair and recombination proteins [BR:crg03400]
    105320057
Enzymes [BR:crg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     105320057
    6.5.1.6  DNA ligase (ATP or NAD+)
     105320057
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     105320057
DNA replication proteins [BR:crg03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    105320057
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     105320057
DNA repair and recombination proteins [BR:crg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     105320057
   NER (nucleotide excision repair)
    Other NER factors
     105320057
   MMR (mismatch excision repair)
    Other MMR factors
     105320057
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 105320057
NCBI-ProteinID: XP_034311220
LinkDB
Position
7:complement(49024029..49054065)
AA seq 937 aa
MQKSIKSFFSSPKPKKDETPTSKNAIEDEVEDERSPLKQNNGSPTKDSPVKATRKGRRCR
VIESDDEEEGTKETEQENQSNSTDPVKVNGVEDKKTKSDEVEMIESPAKSPFGLPIRKTA
RKSMTTPNNKKKSLSFSPQSESPAKKIKLEKEEEPVSNEKSNKNTEADEVKVEVKRETVE
EDMEMEEAKETKTTPKSTKKSAKNQKKKKEEKSPSTKQNNASEEKKSSKTTKDTAEKKPQ
KTFHSFFAPKTEPKVEDTSSEDKKSSDDKSVKKACLSEKREHGGYDPAKSNYHPIEDAVW
TRNEKVPYLALAKTFEAIENISGRLKTIEILCNFFRSVIALSSSDLVQCVYLCLNKLAPA
YEGLELGIGETVLMKAIAQATGRGIDKIKADAQEKGDLGLVAETSRSSQRTMFAPPKLTV
PAVFNKLKEIAGMSGNAAMTKKIEKIKGMFVACRQCEARYLIRSLGGKLRIGLAEQSVLT
ALGNAVFRTPPGQEFPPEVLDAGKGMGADTLKKKMEECTLVIKTTYCECPNYDAIIPALI
KYGIEELPNHCKLTPGVPLKPMLAHPTKGVSEVFKRFDEADFTCEYKYDGERAQIHILEN
GEVHVYSRNSENNTSKYPDIIARIPKVRNDSVTSCVIDSEAVAWDAEKKQIQPFQVLSHR
KRKDADASEIKIQVCVYAFDLLYLNGKSLVKEPFRKRRELLHSSFKEVEGEFVFAKSMIS
SNTDEIAEFLDESVKGNCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVV
MGGFLGTGKRTGKYGGFLLGCYDEENEEFQSICKIGTGFTDADLEKHATFFKDHVTEKPK
PYYHYDSSVEPDHWFDAVQVWEVKCADLSISPTHLAAAGIVDPEKGISLRFPRFLRIRDD
KKAEDATSASQVAELYKSQQQIQNQQKSEKEEVEDFY
NT seq 2814 nt   +upstreamnt  +downstreamnt
atgcaaaagtccataaaatcatttttctcatctccaaagcccaagaaagatgaaacacct
actagcaaaaatgctattgaagatgaagttgaggacgagcgatctcccctgaaacaaaat
aatggatccccgacaaaggactcgcctgtaaaggcgacaagaaagggaaggagatgtcgg
gttattgagagtgatgacgaggaggagggaactaaggaaacagaacaggagaaccagtca
aacagtactgacccggtcaaggttaatggtgttgaagacaagaagacaaagagtgatgaa
gttgagatgattgaatcaccggcaaagtctccatttggacttccaatcagaaaaacagcc
cggaaaagtatgacaacccccaataacaagaagaagagtctgtcctttagtcctcagagt
gaatcgccggccaagaaaatcaagctggagaaggaggaagagccagtctccaatgaaaag
tcaaataaaaatacagaggctgatgaggtgaaagttgaggtcaagagggaaactgtggag
gaagacatggagatggaggaggcaaaggaaactaaaacaacaccaaagtcaactaaaaaa
tcagcaaagaaccagaaaaagaaaaaggaagagaaatctccgagtacaaaacaaaataat
gcttctgaagaaaagaaaagttcaaagaccacaaaagatactgcagaaaagaaaccacag
aaaacttttcacagtttttttgcaccaaaaactgaaccaaaagtggaagatacatcaagt
gaagataaaaaatccagtgatgataagagtgtaaagaaggcttgtttgtcagagaagaga
gagcatggaggatatgatccagccaaatcaaactaccatcccatcgaagatgctgtctgg
acacgaaatgaaaaagttccctacctggctctagccaagacttttgaagcaattgagaac
atttctggaagactgaaaacaatagagatcctctgcaacttctttcggtcggtgatagct
ctgagctccagtgatcttgttcagtgtgtgtacctgtgtctgaacaagttagccccggcg
tacgaaggtctggagctgggaataggggagacagttctgatgaaggccattgcccaggca
acaggtcgaggaattgacaaaattaaagctgatgctcaggagaaaggggacctaggacta
gtggctgagacgagtaggagttcccagagaacgatgtttgctcctccaaagttgactgta
ccagcagtgtttaataagctcaaagagatagcaggcatgtcaggcaatgcggccatgaca
aagaagatagaaaagattaagggtatgtttgtggcatgccgacagtgtgaggcacggtac
ctgatccgctcgctgggcgggaagctccggatcggccttgcggagcagagtgtgctgacc
gccctgggaaatgctgtgttcaggacacctccaggtcaagaatttcctccggaagtattg
gatgctggtaaaggtatgggagctgataccttgaaaaagaaaatggaggaatgtactctt
gtaatcaagacaacctactgtgagtgtccaaattatgatgccatcatcccagctttgata
aagtacggcattgaggagctaccaaaccattgtaaacttaccccgggcgttccactcaaa
cccatgttagcacatcctaccaaaggagtaagtgaagttttcaaacgttttgacgaggca
gacttcacatgtgaatataaatatgacggagagagagcacagattcacattctggagaat
ggagaggtccacgtttacagcaggaactctgagaacaacacaagcaagtacccagacatc
atcgccaggatccccaaggtacgaaacgactctgtcacatcctgtgtcatcgactcggag
gctgttgcctgggacgcagagaagaaacagatccagccattccaagttcttagccacagg
aagaggaaggatgctgatgcctcagaaattaagatccaagtgtgtgtgtatgcctttgac
ctgctgtatctcaatggaaagtccctggtgaaggagccattcaggaagaggagagaactc
ctgcactcttcattcaaagaagtggagggagagtttgtatttgccaagtccatgatttca
tcaaacactgacgagatcgcagagtttcttgatgaatctgttaaaggaaactgtgaaggt
ctcatggtgaaaactctggatgtggatgccacctatgaaattgccaaaagatctcacaac
tggctcaagctgaagaaggactacttggatggggttggggacaccctagacctggtggtg
atggggggatttctggggacaggaaagaggaccggcaaatacgggggattcctactgggc
tgctacgacgaagaaaatgaagagtttcaatccatatgcaagattggaacaggatttact
gatgctgatttagaaaaacatgccacatttttcaaggaccatgtcacagaaaagcccaaa
ccatattatcactacgattcctctgtagaaccagaccactggtttgatgcagtgcaggtt
tgggaggtcaagtgtgctgacctctctatatctcccacacatctcgccgctgcaggaatc
gttgatccagagaaaggtatatccttgaggtttcctcggttcctgagaattagagatgac
aagaaagcggaggatgccacttcagcctcccaggtggcagaactctacaaaagccaacaa
caaattcaaaatcaacaaaaatctgaaaaggaggaggttgaagacttttattga

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