Magallana gigas (Pacific oyster): 105320678
Help
Entry
105320678 CDS
T03920
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105320678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crg03021
]
105320678
Enzymes [BR:
crg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105320678
Transcription machinery [BR:
crg03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
105320678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF6171
DUF1024
Chorismate_synt
Motif
Other DBs
NCBI-GeneID:
105320678
NCBI-ProteinID:
XP_011417016
LinkDB
All DBs
Position
7:28261780..28278871
Genome browser
AA seq
1392 aa
AA seq
DB search
MVKEQFREADVAKKISHVTFGLLNSHQMQQLSHLHVVSKNLYSQDGGRKPVPFGALDHKM
GTSDKENSCETCGKGLADCTGHYGYIDLELPCFHIGYFRATIQLLQMICKTCSQALLSPD
QKKTFMENVKKPLTYLQRKVLKKKIYDKCRKMSVCVSCGAYNGMVKKCGLLKIIHDKYKQ
RKGTDPVIEEFMGSFEAAMEHNKDLEPLLSKTQEVLNPIKVQQIFLQIPEEEIPLLMMNP
EVGSPKDLILTRILVPPICIRPSVVSDLKAGTNEDDITMKMTEIMFLNDVIQKHKATGAK
MSMIMEDWDYLQLQVALLYNSETSGIPLHMQPKKMTRGFVQRLKGKQGRFRGNLSGKRVD
FSGRTVISPDPNMRIDQVAVPVHVAKVLTYPERVNKANIKLMRKLVKNGCDTHPGANFIQ
QRDNNMKRYLRYGNREKIAKELKFGDIVERHLIDNDIILFNRQPSLHKLSIQAFYAKVMP
HRTFRFNECCCNPFNADFDGDEMNLHLPQTEEAKAEAITLMGSKSNIITPRNGEPLIAAI
QDFITGGYLITQKDVFLDRARACQLIASMLSGRERTLKIDLPPPAIIKPIKLWTGKQIFS
VLLRPNKNSPVRANLWTKGKNYSGGEDLCINDSFVVIRNSELLCGAMDKGTLGGGSKNNI
FYVILRDFGEQEAADALSRLARLCPAYLSHRGFSIGIGDVTPGAGLIKAKNNLLEDGYTK
CDSFIRDLEEGKLQTQPGCSEEETLEAMILRELSVIRDHAGKACLRELHKSNSPLNMAIC
GSKGSFINISQMIACVGQQAISGKRTPNGFEDRALPHFEKFSKDPAARGFVENSFYSGLT
PTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSHYDLTVRSSTNDIVQFVYG
GDSLDPASMEGKDQPIDFKRVYDHIKANTRSSFREEPSLSGADLRAFVNTTLQENLFKSF
SDDFKKDLINFIDDVGSEIDKTRQKFGIKNAQRTELPPVLFELNRITSSQAKQFLNICRD
KFMKSQIEPGTAVGAVCAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINASKNI
STPIITAELMVDSDPEFARVVKGRIEKTTLGEVSEYIEEVFLPDDCFILVKLDMDRIRLL
KLEVNVDSIRESLCKSKLRVKPQDIQIHSSAVLSVRPRETSKSSLYYVLQMLKKELPSVM
IKGIQNVTRAVIHIDEKKGETYKLLVEGDNLLAVMATPGIKGTHAFSNNTFAMERTLGIE
AARTTIMNEVNYTMSSHGMSIDIRHVMLLADLMTFKGEVLGITRFGLAKMKESVLMLASF
EKTADHLFEAAYHGQRDTINGVSECIIMGIPMGIGTGLFKLLHKAEKIDPAPPRRELIFD
TPDFHLPGADIS
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggttaaggagcaatttagggaagcagacgtcgcaaagaaaataagccatgttacgttc
ggcttgctcaactcccatcaaatgcaacaactctcgcacctgcatgtggtcagtaaaaac
ctgtatagccaggatgggggtcgtaagccagtaccctttggagccctggatcataaaatg
ggaaccagtgacaaagaaaatagctgtgagacatgtggcaagggattggctgactgcact
ggtcactatggttacatagacctggagttgccatgctttcacataggatattttagagct
actattcagcttcttcaaatgatttgcaagacttgcagtcaagcacttttaagtcctgac
cagaagaaaactttcatggagaatgtaaagaaaccactgacctatctacaaagaaaagtt
ctaaagaagaaaatctatgacaaatgcagaaagatgtccgtctgtgtgtcttgtggtgca
tataatggaatggtgaaaaaatgtggtctgttgaaaataattcatgacaaatacaaacag
cgtaagggtaccgacccagtgatagaggagtttatggggtcgttcgaggcagccatggaa
cacaacaaagacttagagcctctcttgagcaaaacgcaggaggttctgaatcccatcaaa
gtgcaacagattttcctacagatcccggaggaggagattccactattgatgatgaaccct
gaagtcggaagtccgaaagacctgatactgacccgaattttagtcccacccatctgtatt
cgcccctctgttgtctcggatctcaaggcaggaacgaacgaggatgacatcactatgaag
atgactgagatcatgtttttgaatgatgtcattcaaaagcacaaagctacaggtgccaaa
atgtccatgattatggaagattgggactacctgcagctacaagtggcactcttgtacaac
agtgaaacttcagggatacccttacatatgcagccaaagaaaatgacaagagggtttgtg
caaaggttgaaaggtaaacagggtcgtttccgtggaaacctgtctggaaagagagttgat
ttctctggaagaactgtcatttcacctgaccctaacatgaggattgatcaggttgcagtt
cctgttcatgtggccaaagttttgacctatcctgaacgtgtcaacaaggccaatatcaaa
ctgatgaggaaactggtcaagaacgggtgcgacactcacccaggggcaaacttcatacaa
cagagagacaacaacatgaaaaggtacttgagatatggcaatagagaaaaaatcgccaag
gaactaaagtttggtgacattgtggagcgccaccttatagacaacgacattatcttgttc
aatcgacagccctccttgcataaactcagtatccaggcattctatgccaaagtgatgcct
cataggactttcagattcaacgaatgctgttgcaaccctttcaatgctgattttgatgga
gatgaaatgaatcttcatctaccccagaccgaggaggcgaaggctgaagccattactcta
atggggtccaagtcaaacattataactccaaggaatggagaacctttgattgctgccata
caagactttatcacaggtggatacctgataacgcagaaggacgtgttcctggacagggcg
cgggcctgtcagctgatagcctccatgttgtctggcagggagagaactctcaagatcgac
ctacctccgcctgccatcattaagcccataaaactgtggacagggaagcagatcttcagt
gttctccttcgacccaataaaaactctcctgtcagagccaacttatggaccaagggaaag
aactactccggaggagaggacctgtgtatcaatgattcctttgtggtgattcggaacagt
gaacttttgtgtggtgccatggacaaaggaaccctgggaggaggatcgaagaacaacatc
ttttacgtgatactcagggattttggagagcaagaggcagcagacgccttgtccagactg
gccaggctttgtcctgcctatctcagccacagaggattttccatcggcataggggacgta
actcctggtgcagggctcatcaaagctaaaaacaatctcctggaggatggatacactaaa
tgtgatagctttatcagagacttggaagagggcaaactccagacacagccagggtgttca
gaggaggaaactttagaggccatgattctgcgagaactctctgttatccgtgaccacgct
ggtaaagcctgtctccgggagttacacaagagtaacagccccctgaacatggccatttgt
ggatctaaaggttccttcatcaacatctctcagatgatcgcatgtgtgggacaacaggcc
atcagtggcaaaagaacgcccaacggattcgaagatcgagctctgcctcactttgagaaa
ttctccaaagatcctgcagcgcgtggttttgtggagaacagtttctacagtggtctgacc
cccacagagttcttctttcacactatggcggggagggaggggctggtagacactgcagtg
aagacggcggagactgggtacatgcaacgtcggctcgtcaagtctttagaagatttgtgc
tcgcactatgacctcacggtccgcagttccaccaatgacattgtgcagtttgtgtacggt
ggggacagccttgaccctgcttccatggagggcaaggaccagccaattgacttcaagcga
gtgtacgatcatatcaaggcaaacacaaggagcagtttcagagaagaaccttctctatct
ggggccgaccttagagcgtttgtcaacaccacattgcaggaaaacctcttcaagagcttc
agtgatgacttcaaaaaggacttgataaattttattgatgatgtcggctcagagattgat
aaaacaagacagaaatttggtattaagaatgcacagcgaactgaactacccccagtcctc
tttgagttgaacagaataacatcatcacaagcaaagcagtttctgaacatttgcagggac
aagttcatgaagtcgcagatagaaccaggaacggcagtaggagctgtgtgtgcacaaagt
attggagaaccaggaactcagatgaccctcaaaaccttccattttgctggagtggcatcc
atgaacatcacccagggtgtaccaagaatcaaagagattattaacgcctccaagaacatc
agcacccccattataaccgctgagcttatggtggacagtgacccagaatttgccagagta
gttaaagggagaatcgagaaaacaaccttgggagaggtatcggaatacattgaagaagtg
tttttgcctgatgattgctttattcttgtgaaattagatatggacagaattcgacttcta
aagcttgaggtgaatgttgatagcattagggagtccctctgtaaatccaaactgagagtc
aaaccccaggacatccagatccacagctcggcagtgctgagtgtgaggccgagagaaacc
tccaagagttccctgtattatgtcctccagatgctgaagaaggagctcccctctgtcatg
atcaagggaattcaaaatgtaacacgagcagtcattcacattgatgagaagaagggcgaa
acttacaagcttctggtagagggagacaacttactggctgtcatggcaacaccaggtatc
aagggtacacatgccttttcaaacaacacgtttgccatggagaggacgttgggaatcgag
gcagcacgtacaactattatgaacgaagtcaactacaccatgtccagtcacggaatgagt
attgacatacgtcatgtcatgttgctggccgatttaatgacatttaagggtgaagtgtta
ggaatcacacgctttggactggcaaagatgaaggaaagtgttcttatgttggcatcgttt
gaaaagacagctgatcacctgtttgaggctgcataccatggacaaagggatactattaac
ggagtcagtgaatgtataatcatgggcattccgatgggaattgggacaggactcttcaaa
cttctccacaaagctgagaagattgaccccgccccaccccgcagagagctgatctttgac
acaccggatttccacctccctggggcagatatctcctag
DBGET
integrated database retrieval system
