Magallana gigas (Pacific oyster): 105320687
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Entry
105320687 CDS
T03920
Name
(RefSeq) autophagy-related protein 16-1 isoform X2
KO
K17890
autophagy-related protein 16-1
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg04136
Autophagy - other
crg04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105320687
04136 Autophagy - other
105320687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crg04131
]
105320687
03029 Mitochondrial biogenesis [BR:
crg03029
]
105320687
Membrane trafficking [BR:
crg04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
105320687
Others
Specific organelles associated proteins
Auto phagosome
105320687
Mitochondrial biogenesis [BR:
crg03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
105320687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_SCAP
Beta-prop_DCAF12
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
105320687
NCBI-ProteinID:
XP_011417029
LinkDB
All DBs
Position
8:30864515..30876181
Genome browser
AA seq
549 aa
AA seq
DB search
MDPKDLHWKHSLLEQLRQRDKKEKEPFESLISSHWKHFEASQSLKSKNTQLTWEAEKLKE
ENLGLQIKVEQGGGSGNSQALEQKLFKLQEEVTELHRRRGENTQQIIDLNNALQDKEKEL
QGRDARLNDLLANELALKMEIKNLESTIMELEATNQMLKDEHQALQLTYTGLEEKYRKVE
QDNQQLLERWIKQQAKMADQLNAENDQFMAVRQQKLRQDLEDAARENIQILPENQAGVYV
PTSIPICLSASLPTKAQYKFDAHDGDVNAVRWSPSGSLFATGGADRKIKLWEVINGKCEC
KGILTGSNAGIMALDFDLEENTILGASNDFASRVWSLTDHRVRHTLTGHSGKVLAAKFLG
DSFKVVSGSHDRTLKIWDLHSRSCVKTIFAGSSCNDLVTIHGTNIVSGHFDKRVRFWDSR
VDSNTNEILLQGRLTSLDLSPDKMSLLCCTRDDTLKVLDLRMNQISTTLAHDDFKVGCDW
SRAVFSPDTSYAVAGSSDGAIYIWNIKKGKVEKILKEHAHSVIACSWHPVGSYVLSCEKQ
RKTVLWSDI
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggatccaaaggatcttcattggaaacactcgctgttagagcagcttagacagcgggac
aagaaggaaaaggagccgtttgagtcattgatatcttcacactggaaacattttgaagct
tcacagtcactgaagtcaaaaaatacacaactcacatgggaagcagaaaaacttaaggaa
gaaaatcttggtttgcaaatcaaagttgagcaaggtggaggcagtggaaacagtcaggct
ctggaacagaaactcttcaagctccaagaggaggttacagaactccaccggaggagaggg
gagaacacacagcaaataattgacttgaacaatgcactgcaagacaaagaaaaagaatta
cagggaagggatgccagactgaatgatttacttgccaatgaactggctttgaaaatggaa
attaaaaatctagaaagtaccattatggagttggaagccacaaatcagatgttgaaggat
gagcaccaggccctacagctgacgtacacgggtctggaggagaagtacaggaaagtggaa
caggacaatcaacagctgctggagcgctggatcaagcaacaggccaagatggccgaccag
ctgaacgccgagaatgaccagttcatggcagttcggcaacagaaactaagacaggattta
gaagatgcagcaagagaaaatattcaaattttacctgaaaaccaggcaggagtgtatgtt
cctacgtcaattcctatctgtttaagtgcctcccttcctaccaaagcccagtacaaattc
gatgcccatgatggtgatgtgaatgcagtgcgatggagtccttcagggtctttgtttgcc
acaggaggagctgacagaaagatcaaactctgggaagttatcaatggtaaatgtgagtgt
aaaggaatcttgacaggcagcaatgccggcattatggctctggactttgatctagaggaa
aatacaattctaggagcttcaaatgattttgccagcagggtatggtctcttaccgaccac
agagtcaggcatacactgactggtcacagtgggaaagtcctggcagccaagttcctgggt
gacagctttaaagtggtctcaggaagccatgacaggaccctcaaaatctgggacctgcac
agcagatcctgtgtaaaaactatatttgctggttcaagttgtaacgatcttgtgactatt
catggaaccaacatagtcagtggtcattttgacaaaagagtccggttctgggacagccgt
gtggacagcaacaccaatgaaatactgctccagggacgacttacatctctagatctctct
cctgataaaatgagtttactatgctgtacacgagacgataccttaaaggtgttggacttg
agaatgaaccaaatatctacgacactagctcacgacgattttaaggttggctgtgattgg
tcaagagctgtttttagtccagatacttcctatgcagtagcagggtcaagtgatggtgca
atatatatctggaatatcaaaaaaggaaaagttgaaaaaatccttaaagaacatgcgcat
tctgtgatagcctgttcttggcatccagtcggatcctacgtattgagctgcgagaagcaa
cggaaaactgtgttatggtccgatatctga
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integrated database retrieval system
