Magallana gigas (Pacific oyster): 105320807
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Entry
105320807 CDS
T03920
Name
(RefSeq) general transcription and DNA repair factor IIH helicase/translocase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03022
Basal transcription factors
crg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105320807
09124 Replication and repair
03420 Nucleotide excision repair
105320807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crg03021
]
105320807
03400 DNA repair and recombination proteins [BR:
crg03400
]
105320807
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
105320807
Transcription machinery [BR:
crg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105320807
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105320807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
ThylakoidFormat
AAA_34
AAA_22
DUF3638
Motif
Other DBs
NCBI-GeneID:
105320807
NCBI-ProteinID:
XP_065926933
LinkDB
All DBs
Position
9:38348556..38358578
Genome browser
AA seq
781 aa
AA seq
DB search
MMGKKDKRDRAREERRAAKRVKIEEDEDEETTETEPTTEEIPDAATRSVDDTGKEDEFGA
KDYRTELALKPDHNSRPLFVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEFIHEYKL
TAYSLYAAVSVGLETNDIIEYLRRLCKTSLPKGIEEFIKLCTLSYGKVKLVLKHNKYYVE
SQHADVIQVLLKDPVIQECRFRPEETELLTGQVSSKSALQLSKPGPSTTTEGEPKQEGEA
TGEEVPDDIYAYYDKMDKEEDEEEDTKTVSFEVKQEKIEVIQKRCIELEYPLLAEYDFKN
DTVNPDINIDLKPSTVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVGVTAACTVRK
RAICLATSGVAVEQWKQQFKMWSTADDSIICRFTSDAKDKPIGSSILISTYSMLAHSTKR
SWEAEKVMEWMQSQEWGIMILDEVQTIPAKMFRRVLTIVNAHCKLGLTATLVREDDKIAD
LNFLIGPKLYEANWMELQNNGYIARVQCAEVWCPMAPEFYREYLNTKSQKKLLLAVVNPN
KFRACQFLIRYHERRNDKIIVFSDNVFALKSYAIKLNKPYLYGPTSQGERMQILQNFVHN
PKVNTIFVSKVADTSFDLPEANVLIQISAHGGSRRQEAQRMGRILRAKKGAVAEEYNAFF
YSLVSQDTMEMHFSLKRQRFLVNQGYAYKVITKLAGMEEEALGYSTKEEQAKLLQAVCAA
TEQDAEEERVIGEGGFLVSRKVGSMSSMSGADDNLYMEFRGKKGMVASGHAHPLFKRFRK
I
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgatgggaaagaaagacaagagagatagggccagggaagaaagaagggcagcaaagaga
gtcaaaattgaggaagatgaagacgaagaaacaacagagacagaaccaaccacagaggaa
atcccggatgctgcgactcgctctgtggatgacacagggaaggaggatgaatttggtgcc
aaagattacagaacagaactagctctgaaaccagaccacaactccagaccactgtttgtg
gctcctaatggtcacatatttctggagtccttttcacctgtctacaaacatgcacatgat
ttcttaattgccatctcagagccggtgtgtcgccccgaatttatccacgagtacaagctg
acggcctactcgctgtatgccgccgtttctgtcggcctggagaccaatgacatcattgag
tacctgagacgtctgtgtaaaacatcactacccaagggtatcgaggagttcatcaagctg
tgtacattgagttatggtaaggtgaaactggttctgaagcacaacaaatactacgttgag
agtcagcacgcggatgtgatccaggttctgctcaaggacccagtcatacaggaatgtaga
ttccgtcccgaggaaacagagctcctcactggacaggtgtcctcaaagtctgcattacag
ttgtcaaaacccggccctagtaccaccacagagggtgagcccaaacaggagggggaggcg
actggggaggaagtgccggacgatatctatgcatactacgacaagatggacaaagaggaa
gatgaggaggaggacaccaaaaccgtgtcattcgaggtcaaacaggagaaaattgaggtc
atacagaaaagatgtatagagttggagtatccattgttggccgaatatgacttcaaaaat
gacacagtcaaccctgacatcaacattgatctgaagccgtccaccgtactgagaccgtac
caggagaagagtctgaggaagatgtttgggaatggcagagctcgctccggggtcattgtt
cttccctgcggtgcgggtaagacactggtgggggtaactgcggcctgtacggtcaggaaa
cgggccatctgtctggccacctcaggtgtggccgtggagcagtggaagcaacagtttaag
atgtggtccactgcagatgacagcattatctgcagatttacatctgatgctaaggacaaa
cctatagggtcatccattttgatcagcacatactctatgttggctcattcaaccaaacgt
tcatgggaggcagagaaagtcatggagtggatgcagagtcaggaatgggggatcatgatt
cttgacgaggtacagaccataccagccaagatgtttaggcgggtcctgaccattgtaaat
gcccactgtaagctgggactgaccgccacactggtgcgagaggacgacaagatcgctgac
cttaatttcctgattggtccaaagctgtacgaggcgaattggatggagctacagaacaac
ggttatattgccagggtgcagtgtgcagaggtctggtgtccaatggctccagagttttac
agggaatacctcaatacaaagtctcagaaaaaactgttgttggccgttgtgaatcctaac
aagttccgagcttgtcagtttctgatacgatatcacgaacgacgcaacgataaaatcatc
gtgttttctgacaatgtgtttgccttgaaaagctatgcgatcaaactaaacaagccatac
ttgtatggaccgacttctcaaggggagagaatgcagatcttgcagaactttgtccataat
cctaaagtcaacaccatctttgtctccaaggtggctgacacctcctttgatctccccgag
gccaatgtcctgatccagatatctgcccatggaggatctcgcagacaagaggctcaaagg
atgggtcgaattctcagggcaaagaaaggagctgtagctgaggaatacaatgccttcttt
tactcgctggtttcacaggacacgatggagatgcacttctccctaaagagacagaggttt
ctggtgaatcagggctacgcctacaaagtcatcacaaagctggccgggatggaggaggag
gccctgggatacagcaccaaggaggagcaggccaagctgttacaggcagtgtgtgccgcc
actgagcaggacgcggaggaggagagggtcataggggagggaggatttctggtgagcagg
aaggttggcagtatgagttctatgtctggagcagacgacaacctctacatggaattccgc
gggaagaaagggatggtggccagtgggcacgctcatccactgtttaaacggttccgaaaa
atctga
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integrated database retrieval system
